miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20401 3' -60 NC_004687.1 + 38942 0.66 0.758816
Target:  5'- cGCCgGGUgcACGcCCACCCCGCGc-- -3'
miRNA:   3'- -UGGaCCAgcUGCuGGUGGGGCGUcuu -5'
20401 3' -60 NC_004687.1 + 28621 0.66 0.758816
Target:  5'- cACCUGGUU--UGACgGCUCCGCcGAAu -3'
miRNA:   3'- -UGGACCAGcuGCUGgUGGGGCGuCUU- -5'
20401 3' -60 NC_004687.1 + 128086 0.66 0.758816
Target:  5'- aACCcGGUCGcgcCGACCccGCCuCCgGCAGAGg -3'
miRNA:   3'- -UGGaCCAGCu--GCUGG--UGG-GG-CGUCUU- -5'
20401 3' -60 NC_004687.1 + 58070 0.66 0.758816
Target:  5'- uGCUUGGU-GACGGCCAUCuCCuCGGAc -3'
miRNA:   3'- -UGGACCAgCUGCUGGUGG-GGcGUCUu -5'
20401 3' -60 NC_004687.1 + 70809 0.66 0.749433
Target:  5'- aACCUGGUCcACGugCGCCaCgGCGu-- -3'
miRNA:   3'- -UGGACCAGcUGCugGUGG-GgCGUcuu -5'
20401 3' -60 NC_004687.1 + 48132 0.66 0.749433
Target:  5'- cGCCccgGcGUCG-CGACCGCCCucggCGUAGAGc -3'
miRNA:   3'- -UGGa--C-CAGCuGCUGGUGGG----GCGUCUU- -5'
20401 3' -60 NC_004687.1 + 86092 0.66 0.749433
Target:  5'- cCUUGGUgagcgCGGCGACgGCCuuGguGAAg -3'
miRNA:   3'- uGGACCA-----GCUGCUGgUGGggCguCUU- -5'
20401 3' -60 NC_004687.1 + 135899 0.66 0.749433
Target:  5'- gGCgUGGUggucgucugCGACGccgacACCAUCCCGCAGc- -3'
miRNA:   3'- -UGgACCA---------GCUGC-----UGGUGGGGCGUCuu -5'
20401 3' -60 NC_004687.1 + 135464 0.66 0.746599
Target:  5'- cGCCUGGUgccggacgcgcucgUGcCGAUCGCCCUGCAc-- -3'
miRNA:   3'- -UGGACCA--------------GCuGCUGGUGGGGCGUcuu -5'
20401 3' -60 NC_004687.1 + 86024 0.66 0.745653
Target:  5'- cGCCUGcugcgcgacaugcUCGACaaGAUCGCUCCGCAGGAc -3'
miRNA:   3'- -UGGACc------------AGCUG--CUGGUGGGGCGUCUU- -5'
20401 3' -60 NC_004687.1 + 134750 0.66 0.739953
Target:  5'- gGCCcGGUCGGCGAgcaCCAUCUCcCAGGu -3'
miRNA:   3'- -UGGaCCAGCUGCU---GGUGGGGcGUCUu -5'
20401 3' -60 NC_004687.1 + 153694 0.66 0.739953
Target:  5'- gUCUGGgcCGAgGACCAUCgCGCGGGc -3'
miRNA:   3'- uGGACCa-GCUgCUGGUGGgGCGUCUu -5'
20401 3' -60 NC_004687.1 + 149312 0.66 0.738999
Target:  5'- gGCCUcgaucgcGGUCGcCGACUACguggCCCGCAGc- -3'
miRNA:   3'- -UGGA-------CCAGCuGCUGGUG----GGGCGUCuu -5'
20401 3' -60 NC_004687.1 + 111440 0.66 0.73709
Target:  5'- uCCUgGGUCGACGccgagaagagcuacACCggcgacucgGCCCUGCGGAu -3'
miRNA:   3'- uGGA-CCAGCUGC--------------UGG---------UGGGGCGUCUu -5'
20401 3' -60 NC_004687.1 + 141064 0.66 0.73422
Target:  5'- uCUUGGUCGACGacGgugacgcgcugcuggCCACUCCGCAGu- -3'
miRNA:   3'- uGGACCAGCUGC--U---------------GGUGGGGCGUCuu -5'
20401 3' -60 NC_004687.1 + 114950 0.66 0.72073
Target:  5'- cACCUGccGUCGACGuccggGCUGCCaCGCAGAc -3'
miRNA:   3'- -UGGAC--CAGCUGC-----UGGUGGgGCGUCUu -5'
20401 3' -60 NC_004687.1 + 51678 0.66 0.711005
Target:  5'- cAUCUGGgaGAUGGCCACCgCUGCGGc- -3'
miRNA:   3'- -UGGACCagCUGCUGGUGG-GGCGUCuu -5'
20401 3' -60 NC_004687.1 + 69722 0.66 0.711005
Target:  5'- uCCaGGUCGAUGGCCAggaacuccgggUCCgGCAGGg -3'
miRNA:   3'- uGGaCCAGCUGCUGGU-----------GGGgCGUCUu -5'
20401 3' -60 NC_004687.1 + 139044 0.67 0.701216
Target:  5'- gGCCUcGUCGAucaagaCGuacGCCACCCgGCGGAGc -3'
miRNA:   3'- -UGGAcCAGCU------GC---UGGUGGGgCGUCUU- -5'
20401 3' -60 NC_004687.1 + 142988 0.67 0.701216
Target:  5'- gACCUGGgccUGugGAUCGgCCUGUGGAGu -3'
miRNA:   3'- -UGGACCa--GCugCUGGUgGGGCGUCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.