miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20401 5' -58.2 NC_004687.1 + 63004 0.66 0.853136
Target:  5'- uUCgUGAUGGCGGUAGagcacUCCGGUC-CAGu -3'
miRNA:   3'- -GGgACUGCUGUCGUC-----GGGCCAGaGUC- -5'
20401 5' -58.2 NC_004687.1 + 52707 0.66 0.853136
Target:  5'- uUCCUGACGGCgucAGCgaAGUCgCGGUCgagggCGGc -3'
miRNA:   3'- -GGGACUGCUG---UCG--UCGG-GCCAGa----GUC- -5'
20401 5' -58.2 NC_004687.1 + 72687 0.66 0.845378
Target:  5'- aCCgCUGACG-CAacuCGGCaUCGGUCUCGGc -3'
miRNA:   3'- -GG-GACUGCuGUc--GUCG-GGCCAGAGUC- -5'
20401 5' -58.2 NC_004687.1 + 148513 0.66 0.845378
Target:  5'- gCCUUGACGcgcgcgGCGGCGcGCuuGGUCUg-- -3'
miRNA:   3'- -GGGACUGC------UGUCGU-CGggCCAGAguc -5'
20401 5' -58.2 NC_004687.1 + 104209 0.66 0.845378
Target:  5'- gCCUGcCGuacaucguGCAGC-GCCUGGUCgaUCAGg -3'
miRNA:   3'- gGGACuGC--------UGUCGuCGGGCCAG--AGUC- -5'
20401 5' -58.2 NC_004687.1 + 140106 0.66 0.840634
Target:  5'- gCCCUGGCGcCAGCGcagauggaugcgcucGCucugaccgCCGGUCUCc- -3'
miRNA:   3'- -GGGACUGCuGUCGU---------------CG--------GGCCAGAGuc -5'
20401 5' -58.2 NC_004687.1 + 118307 0.66 0.837435
Target:  5'- uUCUGgaGCG-CAGCAGCCUGGgcgCGGg -3'
miRNA:   3'- gGGAC--UGCuGUCGUCGGGCCagaGUC- -5'
20401 5' -58.2 NC_004687.1 + 28939 0.66 0.837435
Target:  5'- gCUCUGGCGcugGGCAGCCCuGUaCUCGu -3'
miRNA:   3'- -GGGACUGCug-UCGUCGGGcCA-GAGUc -5'
20401 5' -58.2 NC_004687.1 + 97576 0.66 0.837435
Target:  5'- uCCUUGAgaucgcgcCGcGCGGCAGCCuCGGcCUCGa -3'
miRNA:   3'- -GGGACU--------GC-UGUCGUCGG-GCCaGAGUc -5'
20401 5' -58.2 NC_004687.1 + 6257 0.66 0.837435
Target:  5'- aUCCUGcCGACcauGCAGUCgaGGcUCUCGGa -3'
miRNA:   3'- -GGGACuGCUGu--CGUCGGg-CC-AGAGUC- -5'
20401 5' -58.2 NC_004687.1 + 105939 0.66 0.837435
Target:  5'- gUCUGuuccUGGCAGCAGCCCGGaagaaUC-CGGc -3'
miRNA:   3'- gGGACu---GCUGUCGUCGGGCC-----AGaGUC- -5'
20401 5' -58.2 NC_004687.1 + 72462 0.66 0.837435
Target:  5'- aCCUgGACGGcCAGCAGCUCGG-Ca--- -3'
miRNA:   3'- gGGA-CUGCU-GUCGUCGGGCCaGaguc -5'
20401 5' -58.2 NC_004687.1 + 47627 0.66 0.829314
Target:  5'- gCCCggUGACGuCAGUgacGCCagCGGUCUCAa -3'
miRNA:   3'- -GGG--ACUGCuGUCGu--CGG--GCCAGAGUc -5'
20401 5' -58.2 NC_004687.1 + 153357 0.66 0.829314
Target:  5'- gCCaaGAcCGACGGCAGCCUGGgccuggacgaCUCGa -3'
miRNA:   3'- -GGgaCU-GCUGUCGUCGGGCCa---------GAGUc -5'
20401 5' -58.2 NC_004687.1 + 114719 0.66 0.829314
Target:  5'- aCCUUGGCGAU--CGGUCgGGUCUCu- -3'
miRNA:   3'- -GGGACUGCUGucGUCGGgCCAGAGuc -5'
20401 5' -58.2 NC_004687.1 + 24923 0.66 0.829314
Target:  5'- gCUcGACGAUGGCAcGCCCGGUggCAc -3'
miRNA:   3'- gGGaCUGCUGUCGU-CGGGCCAgaGUc -5'
20401 5' -58.2 NC_004687.1 + 34031 0.66 0.827669
Target:  5'- cCCCUGGCGucucgccaaucuCGGCgaugcgcuuaguGGCCCGGaUCUCc- -3'
miRNA:   3'- -GGGACUGCu-----------GUCG------------UCGGGCC-AGAGuc -5'
20401 5' -58.2 NC_004687.1 + 90839 0.66 0.821021
Target:  5'- aCCgUGAUGAUGGUGGCCgcaCGGUCgccgcgCAGc -3'
miRNA:   3'- -GGgACUGCUGUCGUCGG---GCCAGa-----GUC- -5'
20401 5' -58.2 NC_004687.1 + 21114 0.66 0.821021
Target:  5'- aCCCcGGCGACA--AGCCCGGcCagCAGc -3'
miRNA:   3'- -GGGaCUGCUGUcgUCGGGCCaGa-GUC- -5'
20401 5' -58.2 NC_004687.1 + 11878 0.67 0.812564
Target:  5'- aCCCUcGACGAC-GCcaaGGCCUGGgcgCAGa -3'
miRNA:   3'- -GGGA-CUGCUGuCG---UCGGGCCagaGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.