miRNA display CGI


Results 1 - 20 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20401 5' -58.2 NC_004687.1 + 5817 0.71 0.541423
Target:  5'- aCCCUGuaccacaGCGACGGUgugguguacgucAGUCCGG-CUCAGg -3'
miRNA:   3'- -GGGAC-------UGCUGUCG------------UCGGGCCaGAGUC- -5'
20401 5' -58.2 NC_004687.1 + 6257 0.66 0.837435
Target:  5'- aUCCUGcCGACcauGCAGUCgaGGcUCUCGGa -3'
miRNA:   3'- -GGGACuGCUGu--CGUCGGg-CC-AGAGUC- -5'
20401 5' -58.2 NC_004687.1 + 11878 0.67 0.812564
Target:  5'- aCCCUcGACGAC-GCcaaGGCCUGGgcgCAGa -3'
miRNA:   3'- -GGGA-CUGCUGuCG---UCGGGCCagaGUC- -5'
20401 5' -58.2 NC_004687.1 + 17424 0.7 0.601616
Target:  5'- gCCUUGGCgGACAGCgaggagaugAGCCCGGUgaugUCGGa -3'
miRNA:   3'- -GGGACUG-CUGUCG---------UCGGGCCAg---AGUC- -5'
20401 5' -58.2 NC_004687.1 + 21114 0.66 0.821021
Target:  5'- aCCCcGGCGACA--AGCCCGGcCagCAGc -3'
miRNA:   3'- -GGGaCUGCUGUcgUCGGGCCaGa-GUC- -5'
20401 5' -58.2 NC_004687.1 + 21822 0.67 0.803951
Target:  5'- ---cGACGACcacgAGCA-CCCGGUCgUCAGg -3'
miRNA:   3'- gggaCUGCUG----UCGUcGGGCCAG-AGUC- -5'
20401 5' -58.2 NC_004687.1 + 24231 0.68 0.758816
Target:  5'- gCCCgaGACGucCAGCAuGCCCgGGUCgucCGGg -3'
miRNA:   3'- -GGGa-CUGCu-GUCGU-CGGG-CCAGa--GUC- -5'
20401 5' -58.2 NC_004687.1 + 24923 0.66 0.829314
Target:  5'- gCUcGACGAUGGCAcGCCCGGUggCAc -3'
miRNA:   3'- gGGaCUGCUGUCGU-CGGGCCAgaGUc -5'
20401 5' -58.2 NC_004687.1 + 25151 0.69 0.701216
Target:  5'- gCC-GACGAUcgcgGGCAGCUCGGcCUCGa -3'
miRNA:   3'- gGGaCUGCUG----UCGUCGGGCCaGAGUc -5'
20401 5' -58.2 NC_004687.1 + 28939 0.66 0.837435
Target:  5'- gCUCUGGCGcugGGCAGCCCuGUaCUCGu -3'
miRNA:   3'- -GGGACUGCug-UCGUCGGGcCA-GAGUc -5'
20401 5' -58.2 NC_004687.1 + 32534 0.7 0.640607
Target:  5'- -aCUGACGACucuugagcuuccgAGCGGCCaGGUgUCGGg -3'
miRNA:   3'- ggGACUGCUG-------------UCGUCGGgCCAgAGUC- -5'
20401 5' -58.2 NC_004687.1 + 34031 0.66 0.827669
Target:  5'- cCCCUGGCGucucgccaaucuCGGCgaugcgcuuaguGGCCCGGaUCUCc- -3'
miRNA:   3'- -GGGACUGCu-----------GUCG------------UCGGGCC-AGAGuc -5'
20401 5' -58.2 NC_004687.1 + 34736 0.73 0.439874
Target:  5'- gCCCgccGACGACGGCAGCgCUGGUggcCAGg -3'
miRNA:   3'- -GGGa--CUGCUGUCGUCG-GGCCAga-GUC- -5'
20401 5' -58.2 NC_004687.1 + 35037 0.68 0.739953
Target:  5'- ---cGGCGGCAGCAGCcCCGGcagCcgCAGg -3'
miRNA:   3'- gggaCUGCUGUCGUCG-GGCCa--Ga-GUC- -5'
20401 5' -58.2 NC_004687.1 + 43299 0.68 0.762539
Target:  5'- gUCCUGuCGAuCAGgcgaucgacgccaucCAGCCCGGUCcCGGc -3'
miRNA:   3'- -GGGACuGCU-GUC---------------GUCGGGCCAGaGUC- -5'
20401 5' -58.2 NC_004687.1 + 44698 0.68 0.739953
Target:  5'- -gCUGACG-CGGcCAGCCCGGg--CAGc -3'
miRNA:   3'- ggGACUGCuGUC-GUCGGGCCagaGUC- -5'
20401 5' -58.2 NC_004687.1 + 47627 0.66 0.829314
Target:  5'- gCCCggUGACGuCAGUgacGCCagCGGUCUCAa -3'
miRNA:   3'- -GGG--ACUGCuGUCGu--CGG--GCCAGAGUc -5'
20401 5' -58.2 NC_004687.1 + 48170 0.7 0.631601
Target:  5'- gCCCguccGAUGAcCGGCaucgagcaccAGCCUGGUCUCAa -3'
miRNA:   3'- -GGGa---CUGCU-GUCG----------UCGGGCCAGAGUc -5'
20401 5' -58.2 NC_004687.1 + 49457 0.69 0.701216
Target:  5'- gCCCgcagGAuCGGCauggugaaccGGCGGUggCCGGUCUCGGg -3'
miRNA:   3'- -GGGa---CU-GCUG----------UCGUCG--GGCCAGAGUC- -5'
20401 5' -58.2 NC_004687.1 + 49951 0.69 0.701216
Target:  5'- gCCUGACGGagcuuuucCAGCAGCgCCGGauUCUucCGGg -3'
miRNA:   3'- gGGACUGCU--------GUCGUCG-GGCC--AGA--GUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.