miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20402 3' -63.3 NC_004687.1 + 70995 0.66 0.626471
Target:  5'- -cGUCGGCCUugaGGaccGCGUCUGGGCCcGGg -3'
miRNA:   3'- ucUAGCCGGG---CC---CGCGGGCCUGGuUC- -5'
20402 3' -63.3 NC_004687.1 + 20390 0.66 0.626471
Target:  5'- cGGUaGGCCaucGGCGCCCaGACCGc- -3'
miRNA:   3'- uCUAgCCGGgc-CCGCGGGcCUGGUuc -5'
20402 3' -63.3 NC_004687.1 + 76445 0.66 0.626471
Target:  5'- cGGUCGaUCCGGGCuggacCUCGGACUggGa -3'
miRNA:   3'- uCUAGCcGGGCCCGc----GGGCCUGGuuC- -5'
20402 3' -63.3 NC_004687.1 + 123811 0.66 0.626471
Target:  5'- aAGAUCuGGCCaGGGC-CCUGG-CCAc- -3'
miRNA:   3'- -UCUAG-CCGGgCCCGcGGGCCuGGUuc -5'
20402 3' -63.3 NC_004687.1 + 140412 0.66 0.626471
Target:  5'- cGAga-GCCCGGGCGaCCgGGGUCGAGc -3'
miRNA:   3'- uCUagcCGGGCCCGC-GGgCCUGGUUC- -5'
20402 3' -63.3 NC_004687.1 + 61183 0.66 0.625501
Target:  5'- cAGAacUCGGCCauGGCGUgaacgcuCUGGGCCAGc -3'
miRNA:   3'- -UCU--AGCCGGgcCCGCG-------GGCCUGGUUc -5'
20402 3' -63.3 NC_004687.1 + 127181 0.66 0.625501
Target:  5'- cGGUUGGCCUugagcguGGGCaGCgCGG-CCAGGc -3'
miRNA:   3'- uCUAGCCGGG-------CCCG-CGgGCCuGGUUC- -5'
20402 3' -63.3 NC_004687.1 + 101968 0.66 0.616772
Target:  5'- gAGaAUCGGCgCCGGGCggaguGUUCGGGgguCCAGGc -3'
miRNA:   3'- -UC-UAGCCG-GGCCCG-----CGGGCCU---GGUUC- -5'
20402 3' -63.3 NC_004687.1 + 77387 0.66 0.616772
Target:  5'- cAGAcUCaGGCCCGGGaUGCCauuGGACUg-- -3'
miRNA:   3'- -UCU-AG-CCGGGCCC-GCGGg--CCUGGuuc -5'
20402 3' -63.3 NC_004687.1 + 67162 0.66 0.616772
Target:  5'- cGAUcCGGCCuCGGuGCGCuuGGAgCu-- -3'
miRNA:   3'- uCUA-GCCGG-GCC-CGCGggCCUgGuuc -5'
20402 3' -63.3 NC_004687.1 + 545 0.66 0.616772
Target:  5'- uAGGUCGGCagcggcggGGGCGgggugggcaguCCCGGAUCGAu -3'
miRNA:   3'- -UCUAGCCGgg------CCCGC-----------GGGCCUGGUUc -5'
20402 3' -63.3 NC_004687.1 + 36462 0.66 0.615802
Target:  5'- uGGUCGGgCUGGGCGuagaugaCCCGGucgucCCAGa -3'
miRNA:   3'- uCUAGCCgGGCCCGC-------GGGCCu----GGUUc -5'
20402 3' -63.3 NC_004687.1 + 8053 0.66 0.615802
Target:  5'- uGGAUCGGCCCcggccagugcGGGaaggugcgccucuUGCCCGGcagcAUCGGGa -3'
miRNA:   3'- -UCUAGCCGGG----------CCC-------------GCGGGCC----UGGUUC- -5'
20402 3' -63.3 NC_004687.1 + 116484 0.66 0.610957
Target:  5'- cGGAggCGGaCCGGcaGCGCCCGGgggcagcaucgguugGCCGGGc -3'
miRNA:   3'- -UCUa-GCCgGGCC--CGCGGGCC---------------UGGUUC- -5'
20402 3' -63.3 NC_004687.1 + 66977 0.66 0.607083
Target:  5'- cGGAUCGGCa-GGGCGCCgGucGACUu-- -3'
miRNA:   3'- -UCUAGCCGggCCCGCGGgC--CUGGuuc -5'
20402 3' -63.3 NC_004687.1 + 104034 0.66 0.607083
Target:  5'- aAGAgccuGCCUgaggaGGGCGCCCaGGCCGGGc -3'
miRNA:   3'- -UCUagc-CGGG-----CCCGCGGGcCUGGUUC- -5'
20402 3' -63.3 NC_004687.1 + 124195 0.66 0.606115
Target:  5'- cGGAUCuugagcaGGCCCagugcGGCGCCaGaGACCAGGu -3'
miRNA:   3'- -UCUAG-------CCGGGc----CCGCGGgC-CUGGUUC- -5'
20402 3' -63.3 NC_004687.1 + 106839 0.66 0.597411
Target:  5'- -aGUUGGCCaCGcGGCGCCCGuaguACCGGu -3'
miRNA:   3'- ucUAGCCGG-GC-CCGCGGGCc---UGGUUc -5'
20402 3' -63.3 NC_004687.1 + 74484 0.66 0.597411
Target:  5'- cAGAUCggcgaccaGGCCCacgccgaccgGGGCaguGCCCaGGAUCGAGg -3'
miRNA:   3'- -UCUAG--------CCGGG----------CCCG---CGGG-CCUGGUUC- -5'
20402 3' -63.3 NC_004687.1 + 68598 0.66 0.591619
Target:  5'- ---cUGGCCCuGGGCucgcucguagacguuGCgCCGGAUCAGGg -3'
miRNA:   3'- ucuaGCCGGG-CCCG---------------CG-GGCCUGGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.