miRNA display CGI


Results 21 - 40 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20402 3' -63.3 NC_004687.1 + 27815 0.66 0.587762
Target:  5'- cGG-CGGCuuGGGCGCCUcuGCCGGa -3'
miRNA:   3'- uCUaGCCGggCCCGCGGGccUGGUUc -5'
20402 3' -63.3 NC_004687.1 + 24427 0.66 0.587762
Target:  5'- gAGAUCGGCCaC-GGCGCCUucgaGG-UCAAGc -3'
miRNA:   3'- -UCUAGCCGG-GcCCGCGGG----CCuGGUUC- -5'
20402 3' -63.3 NC_004687.1 + 106422 0.66 0.587762
Target:  5'- cGAUCGuGCCCGagcgcgucGGCGauCCCGaGACCGGc -3'
miRNA:   3'- uCUAGC-CGGGC--------CCGC--GGGC-CUGGUUc -5'
20402 3' -63.3 NC_004687.1 + 49592 0.66 0.587762
Target:  5'- cGA-CGGUgaacUCGGGC-CCCGGcGCCGAGg -3'
miRNA:   3'- uCUaGCCG----GGCCCGcGGGCC-UGGUUC- -5'
20402 3' -63.3 NC_004687.1 + 20507 0.66 0.587762
Target:  5'- cGGUCGGCCaGGGCcuGCaucaUGGACCcGGc -3'
miRNA:   3'- uCUAGCCGGgCCCG--CGg---GCCUGGuUC- -5'
20402 3' -63.3 NC_004687.1 + 51877 0.66 0.587762
Target:  5'- uAGGgccCGGCCUGGGCGCCUcc-UCAGGc -3'
miRNA:   3'- -UCUa--GCCGGGCCCGCGGGccuGGUUC- -5'
20402 3' -63.3 NC_004687.1 + 113227 0.66 0.587762
Target:  5'- uGGAUCGGCUgaauggugcucuCGGuGuCGCCCGGcagcGCCGGa -3'
miRNA:   3'- -UCUAGCCGG------------GCC-C-GCGGGCC----UGGUUc -5'
20402 3' -63.3 NC_004687.1 + 6130 0.66 0.587762
Target:  5'- -cGUUGGCCUGGGCuguggccaGUCCGGcgcACCAGa -3'
miRNA:   3'- ucUAGCCGGGCCCG--------CGGGCC---UGGUUc -5'
20402 3' -63.3 NC_004687.1 + 90483 0.66 0.578142
Target:  5'- -uGUCGGCCCaGGCGCUgaucuCGGucucGCCGAa -3'
miRNA:   3'- ucUAGCCGGGcCCGCGG-----GCC----UGGUUc -5'
20402 3' -63.3 NC_004687.1 + 150052 0.66 0.578142
Target:  5'- aGGGccUUGGUCaucGGCGCCCGGACUccGg -3'
miRNA:   3'- -UCU--AGCCGGgc-CCGCGGGCCUGGuuC- -5'
20402 3' -63.3 NC_004687.1 + 81705 0.66 0.578142
Target:  5'- ----aGGCCCuGGGCGaccgcuggaCCCuGACCAAGg -3'
miRNA:   3'- ucuagCCGGG-CCCGC---------GGGcCUGGUUC- -5'
20402 3' -63.3 NC_004687.1 + 80347 0.66 0.578142
Target:  5'- uGGAUggaGGCCgGGGCcgagacacGUCCGGACUGAu -3'
miRNA:   3'- -UCUAg--CCGGgCCCG--------CGGGCCUGGUUc -5'
20402 3' -63.3 NC_004687.1 + 121035 0.66 0.577182
Target:  5'- --cUCGGCgaugagcugcuCCaGGGUGCCCGGAggcaggcCCAGGa -3'
miRNA:   3'- ucuAGCCG-----------GG-CCCGCGGGCCU-------GGUUC- -5'
20402 3' -63.3 NC_004687.1 + 135401 0.66 0.568557
Target:  5'- gAGAUCGaGgCCGGGUccaugaugcagGCCCuGGCCGAc -3'
miRNA:   3'- -UCUAGC-CgGGCCCG-----------CGGGcCUGGUUc -5'
20402 3' -63.3 NC_004687.1 + 138995 0.66 0.568557
Target:  5'- cGGA--GGCCCGGGUGCC-GGAgCGu- -3'
miRNA:   3'- -UCUagCCGGGCCCGCGGgCCUgGUuc -5'
20402 3' -63.3 NC_004687.1 + 124262 0.66 0.568557
Target:  5'- -cGUCGaCCugCGGGCgaGCCUGGGCCAGGc -3'
miRNA:   3'- ucUAGCcGG--GCCCG--CGGGCCUGGUUC- -5'
20402 3' -63.3 NC_004687.1 + 117430 0.66 0.568557
Target:  5'- ---cCGGugugaCCCGGGUGCCCGG-CCu-- -3'
miRNA:   3'- ucuaGCC-----GGGCCCGCGGGCCuGGuuc -5'
20402 3' -63.3 NC_004687.1 + 39217 0.66 0.568557
Target:  5'- -aGUgGGUCCGGGUGCCgauCGaGACCAc- -3'
miRNA:   3'- ucUAgCCGGGCCCGCGG---GC-CUGGUuc -5'
20402 3' -63.3 NC_004687.1 + 22009 0.66 0.568557
Target:  5'- cAGcgCGGuCCCGccgccGCGUCCGGGCCu-- -3'
miRNA:   3'- -UCuaGCC-GGGCc----CGCGGGCCUGGuuc -5'
20402 3' -63.3 NC_004687.1 + 80448 0.67 0.559011
Target:  5'- ----gGGCCCaGGCGCCCcGGCCu-- -3'
miRNA:   3'- ucuagCCGGGcCCGCGGGcCUGGuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.