miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20402 3' -63.3 NC_004687.1 + 89555 0.68 0.475717
Target:  5'- cGAUCcGCUgGGGCGUCCGGuACUAc- -3'
miRNA:   3'- uCUAGcCGGgCCCGCGGGCC-UGGUuc -5'
20402 3' -63.3 NC_004687.1 + 74399 0.69 0.407192
Target:  5'- ----gGGCCUGGGCGCUCaacaaGGugCAGGa -3'
miRNA:   3'- ucuagCCGGGCCCGCGGG-----CCugGUUC- -5'
20402 3' -63.3 NC_004687.1 + 43586 0.69 0.407192
Target:  5'- cAGAUCcgcgaGGCCgCGuggaaGGaCGUCCGGGCCAAGg -3'
miRNA:   3'- -UCUAG-----CCGG-GC-----CC-GCGGGCCUGGUUC- -5'
20402 3' -63.3 NC_004687.1 + 5863 0.69 0.423747
Target:  5'- uGAcCGGaguCCGGGCGCCgauGACCAAGg -3'
miRNA:   3'- uCUaGCCg--GGCCCGCGGgc-CUGGUUC- -5'
20402 3' -63.3 NC_004687.1 + 101024 0.69 0.438131
Target:  5'- cGA-CGGCCCGccacugguugaucaGG-GCCCGGGCCAu- -3'
miRNA:   3'- uCUaGCCGGGC--------------CCgCGGGCCUGGUuc -5'
20402 3' -63.3 NC_004687.1 + 138225 0.68 0.458029
Target:  5'- -cGUCGcGCUCGGGCGCgCGGuCCcGGu -3'
miRNA:   3'- ucUAGC-CGGGCCCGCGgGCCuGGuUC- -5'
20402 3' -63.3 NC_004687.1 + 49077 0.68 0.458029
Target:  5'- cGAcCGGUacuaCGGGCGCCgCGuGGCCAAc -3'
miRNA:   3'- uCUaGCCGg---GCCCGCGG-GC-CUGGUUc -5'
20402 3' -63.3 NC_004687.1 + 126890 0.68 0.46683
Target:  5'- uGcgCGGCuuGacCGCUCGGACCAAGg -3'
miRNA:   3'- uCuaGCCGggCccGCGGGCCUGGUUC- -5'
20402 3' -63.3 NC_004687.1 + 107686 0.68 0.46683
Target:  5'- ---cCGGCCC-GGCGUCCGG-CCAc- -3'
miRNA:   3'- ucuaGCCGGGcCCGCGGGCCuGGUuc -5'
20402 3' -63.3 NC_004687.1 + 51179 0.7 0.391048
Target:  5'- aAGGUCGGCggcauCCa-GCGCCUGGGCCAGu -3'
miRNA:   3'- -UCUAGCCG-----GGccCGCGGGCCUGGUUc -5'
20402 3' -63.3 NC_004687.1 + 153325 0.7 0.391048
Target:  5'- uGGUCGGCCCcggaggcuccGGGgGUgCGGucGCCAAGa -3'
miRNA:   3'- uCUAGCCGGG----------CCCgCGgGCC--UGGUUC- -5'
20402 3' -63.3 NC_004687.1 + 18116 0.7 0.367629
Target:  5'- gAGuUC-GCCCGGGCGCgCGGGCUg-- -3'
miRNA:   3'- -UCuAGcCGGGCCCGCGgGCCUGGuuc -5'
20402 3' -63.3 NC_004687.1 + 6217 0.77 0.142883
Target:  5'- cAGAUCGGCCCGGGCaaGCaccgcaaacccgauCUGGACgGAGg -3'
miRNA:   3'- -UCUAGCCGGGCCCG--CG--------------GGCCUGgUUC- -5'
20402 3' -63.3 NC_004687.1 + 135190 0.75 0.192061
Target:  5'- -cGUCGGCCuCGGGCGCgaCCGGcagggcuacACCAAGg -3'
miRNA:   3'- ucUAGCCGG-GCCCGCG--GGCC---------UGGUUC- -5'
20402 3' -63.3 NC_004687.1 + 29117 0.74 0.201341
Target:  5'- aGGcAUCGGCCCGGGCaGUCCaGGCCu-- -3'
miRNA:   3'- -UC-UAGCCGGGCCCG-CGGGcCUGGuuc -5'
20402 3' -63.3 NC_004687.1 + 86511 0.73 0.231544
Target:  5'- cGGAcgCGGCCCcGGCGCucaacCCGGACCAc- -3'
miRNA:   3'- -UCUa-GCCGGGcCCGCG-----GGCCUGGUuc -5'
20402 3' -63.3 NC_004687.1 + 91126 0.72 0.303325
Target:  5'- ---cCGGCCCGGG-GCCCcggcgacGACCAAGa -3'
miRNA:   3'- ucuaGCCGGGCCCgCGGGc------CUGGUUC- -5'
20402 3' -63.3 NC_004687.1 + 115391 0.71 0.33008
Target:  5'- cGAUCgaGGCCCGaggagauGGcCGCgCGGGCCAAGg -3'
miRNA:   3'- uCUAG--CCGGGC-------CC-GCGgGCCUGGUUC- -5'
20402 3' -63.3 NC_004687.1 + 78587 0.71 0.330788
Target:  5'- -cGUCGguucugaccGCCgGGGCGCCCGGAgCCAc- -3'
miRNA:   3'- ucUAGC---------CGGgCCCGCGGGCCU-GGUuc -5'
20402 3' -63.3 NC_004687.1 + 39532 0.7 0.367629
Target:  5'- cGGU-GGCCCcGGCGCCUGGcgucGCCGGGc -3'
miRNA:   3'- uCUAgCCGGGcCCGCGGGCC----UGGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.