miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20402 5' -57.1 NC_004687.1 + 148201 0.66 0.865845
Target:  5'- -cCCUGGUuGAUGUgAuuGCCGGUCUGa -3'
miRNA:   3'- caGGACUAcCUGCGgUu-CGGCCAGAU- -5'
20402 5' -57.1 NC_004687.1 + 17489 0.66 0.865844
Target:  5'- -aCCUGAUGuGCGCCGAGgaGGaCUGa -3'
miRNA:   3'- caGGACUACcUGCGGUUCggCCaGAU- -5'
20402 5' -57.1 NC_004687.1 + 108128 0.66 0.858216
Target:  5'- cGUCCUGcAUGGccuUGuCCGGGuuGGUCg- -3'
miRNA:   3'- -CAGGAC-UACCu--GC-GGUUCggCCAGau -5'
20402 5' -57.1 NC_004687.1 + 42710 0.66 0.858216
Target:  5'- cUCCUGuUGGGCGUCcAGCUGGcCc- -3'
miRNA:   3'- cAGGACuACCUGCGGuUCGGCCaGau -5'
20402 5' -57.1 NC_004687.1 + 87069 0.66 0.847992
Target:  5'- aUCCUGcggaugccGUGcGugGCCGAGgccugguaccaggaCCGGUCUAa -3'
miRNA:   3'- cAGGAC--------UAC-CugCGGUUC--------------GGCCAGAU- -5'
20402 5' -57.1 NC_004687.1 + 43881 0.66 0.841534
Target:  5'- aGUCCgagcacaUGAaGGGCaaGCCGAGCCaGGUCg- -3'
miRNA:   3'- -CAGG-------ACUaCCUG--CGGUUCGG-CCAGau -5'
20402 5' -57.1 NC_004687.1 + 107235 0.66 0.825712
Target:  5'- uGUCCacacgGGUGGGCGCC---UCGGUCUc -3'
miRNA:   3'- -CAGGa----CUACCUGCGGuucGGCCAGAu -5'
20402 5' -57.1 NC_004687.1 + 125472 0.66 0.825711
Target:  5'- cGUCC-GGUcGACGCCGAGuggcguCCGGUCa- -3'
miRNA:   3'- -CAGGaCUAcCUGCGGUUC------GGCCAGau -5'
20402 5' -57.1 NC_004687.1 + 139684 0.66 0.825711
Target:  5'- -aCCUGuccGGCGgCAAGCUGGUCUc -3'
miRNA:   3'- caGGACuacCUGCgGUUCGGCCAGAu -5'
20402 5' -57.1 NC_004687.1 + 72400 0.67 0.817123
Target:  5'- cGUCCc--UGGGCaCCGAGuuGGUCUGc -3'
miRNA:   3'- -CAGGacuACCUGcGGUUCggCCAGAU- -5'
20402 5' -57.1 NC_004687.1 + 35608 0.67 0.808366
Target:  5'- cUCgUGGUGGugGC---GCCGGUCg- -3'
miRNA:   3'- cAGgACUACCugCGguuCGGCCAGau -5'
20402 5' -57.1 NC_004687.1 + 121214 0.67 0.808366
Target:  5'- cGUCCUGA-GGACcggcguccuCCAGGCCauuggGGUCUGc -3'
miRNA:   3'- -CAGGACUaCCUGc--------GGUUCGG-----CCAGAU- -5'
20402 5' -57.1 NC_004687.1 + 23782 0.67 0.787627
Target:  5'- gGUCCUGcgGucGCGCCGAGCCcagaagcucgacguGGUCg- -3'
miRNA:   3'- -CAGGACuaCc-UGCGGUUCGG--------------CCAGau -5'
20402 5' -57.1 NC_004687.1 + 111849 0.67 0.781163
Target:  5'- -gCCUGGgccUGGcGgGCCAAGCCGGUg-- -3'
miRNA:   3'- caGGACU---ACC-UgCGGUUCGGCCAgau -5'
20402 5' -57.1 NC_004687.1 + 10770 0.67 0.771814
Target:  5'- uGUCgUGGuacUGGAUgGCC-AGCCGGUCg- -3'
miRNA:   3'- -CAGgACU---ACCUG-CGGuUCGGCCAGau -5'
20402 5' -57.1 NC_004687.1 + 72848 0.67 0.771814
Target:  5'- -gCCUGGUGG-CGCCu-GCCGGg--- -3'
miRNA:   3'- caGGACUACCuGCGGuuCGGCCagau -5'
20402 5' -57.1 NC_004687.1 + 35421 0.68 0.76234
Target:  5'- aGUCCUGGUaGGGCaCCAcGGCCaGGUCc- -3'
miRNA:   3'- -CAGGACUA-CCUGcGGU-UCGG-CCAGau -5'
20402 5' -57.1 NC_004687.1 + 71700 0.68 0.76234
Target:  5'- -aCCUGAUgGGugGCCAGGgugaGGUCg- -3'
miRNA:   3'- caGGACUA-CCugCGGUUCgg--CCAGau -5'
20402 5' -57.1 NC_004687.1 + 14191 0.68 0.752749
Target:  5'- cGUCCUGGU--ACGCCGAcccGCCGGUg-- -3'
miRNA:   3'- -CAGGACUAccUGCGGUU---CGGCCAgau -5'
20402 5' -57.1 NC_004687.1 + 48645 0.68 0.743052
Target:  5'- aGUCCc---GGuCGUCGAGCCGGUCg- -3'
miRNA:   3'- -CAGGacuaCCuGCGGUUCGGCCAGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.