miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20402 5' -57.1 NC_004687.1 + 154849 1.06 0.003173
Target:  5'- gGUCCUGAUGGACGCCAAGCCGGUCUAu -3'
miRNA:   3'- -CAGGACUACCUGCGGUUCGGCCAGAU- -5'
20402 5' -57.1 NC_004687.1 + 104042 0.73 0.472422
Target:  5'- -gCCUGAggaGGGCGcCCAGGCCGGgccCUAc -3'
miRNA:   3'- caGGACUa--CCUGC-GGUUCGGCCa--GAU- -5'
20402 5' -57.1 NC_004687.1 + 77822 0.73 0.481887
Target:  5'- cUCCUGGUGcGACuGCCAggcGGCUGGUCc- -3'
miRNA:   3'- cAGGACUAC-CUG-CGGU---UCGGCCAGau -5'
20402 5' -57.1 NC_004687.1 + 69432 0.72 0.509836
Target:  5'- cGUCCgGAUGGAUGCCGAacuugccGCCGGg--- -3'
miRNA:   3'- -CAGGaCUACCUGCGGUU-------CGGCCagau -5'
20402 5' -57.1 NC_004687.1 + 60991 0.72 0.520615
Target:  5'- gGUCCUGGcUGGAUgGCCAGGgCGGUgUAc -3'
miRNA:   3'- -CAGGACU-ACCUG-CGGUUCgGCCAgAU- -5'
20402 5' -57.1 NC_004687.1 + 3677 0.71 0.550439
Target:  5'- cGUCCUGGccaccgGGAuacuCGaCGAGCCGGUCUAu -3'
miRNA:   3'- -CAGGACUa-----CCU----GCgGUUCGGCCAGAU- -5'
20402 5' -57.1 NC_004687.1 + 113537 0.71 0.56454
Target:  5'- aGUCCUGAUcaGCGCCAGGCCaacgaaggccgaugcGGUCg- -3'
miRNA:   3'- -CAGGACUAccUGCGGUUCGG---------------CCAGau -5'
20402 5' -57.1 NC_004687.1 + 121282 0.71 0.570612
Target:  5'- aUCCUGcUGGugGUCGAGuCCGG-CUAc -3'
miRNA:   3'- cAGGACuACCugCGGUUC-GGCCaGAU- -5'
20402 5' -57.1 NC_004687.1 + 27723 0.71 0.580768
Target:  5'- -aCUUGGUGGAagggugaucuuCGCCAGGCCcGUCUGg -3'
miRNA:   3'- caGGACUACCU-----------GCGGUUCGGcCAGAU- -5'
20402 5' -57.1 NC_004687.1 + 130573 0.71 0.59096
Target:  5'- cUCC-GGUGGuACGCggaCAAGCCGGUCg- -3'
miRNA:   3'- cAGGaCUACC-UGCG---GUUCGGCCAGau -5'
20402 5' -57.1 NC_004687.1 + 36136 0.7 0.601183
Target:  5'- uGUCCUgGGUGGAgGCCuucAGCCGGa--- -3'
miRNA:   3'- -CAGGA-CUACCUgCGGu--UCGGCCagau -5'
20402 5' -57.1 NC_004687.1 + 48241 0.7 0.611428
Target:  5'- -aCgUGGccGGACGCCGGGCCGGUg-- -3'
miRNA:   3'- caGgACUa-CCUGCGGUUCGGCCAgau -5'
20402 5' -57.1 NC_004687.1 + 72204 0.7 0.611428
Target:  5'- cGUCgCUGGUGGugGCCGA-CagGGUCUGu -3'
miRNA:   3'- -CAG-GACUACCugCGGUUcGg-CCAGAU- -5'
20402 5' -57.1 NC_004687.1 + 43127 0.7 0.611428
Target:  5'- aUCCcGcucAUGGGCGCCgGAGCCGGUgCUGc -3'
miRNA:   3'- cAGGaC---UACCUGCGG-UUCGGCCA-GAU- -5'
20402 5' -57.1 NC_004687.1 + 46734 0.69 0.672954
Target:  5'- cUCUgugucGAUGGGCGCCgAGGCCGGaUUUAc -3'
miRNA:   3'- cAGGa----CUACCUGCGG-UUCGGCC-AGAU- -5'
20402 5' -57.1 NC_004687.1 + 141827 0.68 0.723372
Target:  5'- aGUUCUGGUGGcaACGCuCAGGuCCGG-CUGa -3'
miRNA:   3'- -CAGGACUACC--UGCG-GUUC-GGCCaGAU- -5'
20402 5' -57.1 NC_004687.1 + 94421 0.68 0.733256
Target:  5'- -gCCgUGAUGGuCGuccacuCCAGGCCGGUCg- -3'
miRNA:   3'- caGG-ACUACCuGC------GGUUCGGCCAGau -5'
20402 5' -57.1 NC_004687.1 + 48645 0.68 0.743052
Target:  5'- aGUCCc---GGuCGUCGAGCCGGUCg- -3'
miRNA:   3'- -CAGGacuaCCuGCGGUUCGGCCAGau -5'
20402 5' -57.1 NC_004687.1 + 14191 0.68 0.752749
Target:  5'- cGUCCUGGU--ACGCCGAcccGCCGGUg-- -3'
miRNA:   3'- -CAGGACUAccUGCGGUU---CGGCCAgau -5'
20402 5' -57.1 NC_004687.1 + 35421 0.68 0.76234
Target:  5'- aGUCCUGGUaGGGCaCCAcGGCCaGGUCc- -3'
miRNA:   3'- -CAGGACUA-CCUGcGGU-UCGG-CCAGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.