miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20403 3' -67.9 NC_004687.1 + 120195 0.66 0.415094
Target:  5'- uCU-CCCAgUCCUGCaCCauGCCGUUGCCg -3'
miRNA:   3'- -GAcGGGU-GGGGCG-GGggCGGCGACGG- -5'
20403 3' -67.9 NC_004687.1 + 34813 0.66 0.415094
Target:  5'- -aGUCCACCCgGCCCCgGaCGUgguggGUCc -3'
miRNA:   3'- gaCGGGUGGGgCGGGGgCgGCGa----CGG- -5'
20403 3' -67.9 NC_004687.1 + 2995 0.66 0.415094
Target:  5'- -aGCCC-UUgCGCCCCUGCUugUGCCa -3'
miRNA:   3'- gaCGGGuGGgGCGGGGGCGGcgACGG- -5'
20403 3' -67.9 NC_004687.1 + 23926 0.66 0.415094
Target:  5'- -gGUCCugUCCgGCCuCUCGCacgcagGCUGCCa -3'
miRNA:   3'- gaCGGGugGGG-CGG-GGGCGg-----CGACGG- -5'
20403 3' -67.9 NC_004687.1 + 125582 0.66 0.415094
Target:  5'- -cGCUCGCCaaGCUuggCCUGCuCGCUGCg -3'
miRNA:   3'- gaCGGGUGGggCGG---GGGCG-GCGACGg -5'
20403 3' -67.9 NC_004687.1 + 30666 0.66 0.415094
Target:  5'- -gGCUCACCCCGaucuaggCCCCGCa-UUGCUc -3'
miRNA:   3'- gaCGGGUGGGGCg------GGGGCGgcGACGG- -5'
20403 3' -67.9 NC_004687.1 + 109515 0.66 0.415094
Target:  5'- aUGCUUcuauccggauuGCCCCGaCCCCGagGCUGUCg -3'
miRNA:   3'- gACGGG-----------UGGGGCgGGGGCggCGACGG- -5'
20403 3' -67.9 NC_004687.1 + 123897 0.66 0.410274
Target:  5'- --aCCCAUCCCggcaugcgcgacgaaGUCCUCGaaGCUGCCg -3'
miRNA:   3'- gacGGGUGGGG---------------CGGGGGCggCGACGG- -5'
20403 3' -67.9 NC_004687.1 + 81948 0.66 0.407079
Target:  5'- -gGCCgguCACUCCgGCCaCCgCGCCGCcgaccaUGCCg -3'
miRNA:   3'- gaCGG---GUGGGG-CGG-GG-GCGGCG------ACGG- -5'
20403 3' -67.9 NC_004687.1 + 144489 0.66 0.407079
Target:  5'- -gGCCCACUCgGCcagguCCUCGgCGUUGUCg -3'
miRNA:   3'- gaCGGGUGGGgCG-----GGGGCgGCGACGG- -5'
20403 3' -67.9 NC_004687.1 + 55671 0.66 0.407079
Target:  5'- --uCCCACCUCugGCCCCugaCGCUGgaGCCc -3'
miRNA:   3'- gacGGGUGGGG--CGGGG---GCGGCgaCGG- -5'
20403 3' -67.9 NC_004687.1 + 103796 0.66 0.407079
Target:  5'- -aGUCC-CUCgGCCCgCCGCCGCaccgugUGCUu -3'
miRNA:   3'- gaCGGGuGGGgCGGG-GGCGGCG------ACGG- -5'
20403 3' -67.9 NC_004687.1 + 26858 0.66 0.407079
Target:  5'- -gGCCagaACCaCCGCCCCCacaCCGUU-CCa -3'
miRNA:   3'- gaCGGg--UGG-GGCGGGGGc--GGCGAcGG- -5'
20403 3' -67.9 NC_004687.1 + 100883 0.66 0.407079
Target:  5'- -gGCCCAggucggugaUCCGCCauucgCCGCCuCUGCCa -3'
miRNA:   3'- gaCGGGUg--------GGGCGGg----GGCGGcGACGG- -5'
20403 3' -67.9 NC_004687.1 + 35829 0.66 0.407079
Target:  5'- aUGCCaccccagcgaGCCgCCGCCCUuuCGUCGUUaGCCg -3'
miRNA:   3'- gACGGg---------UGG-GGCGGGG--GCGGCGA-CGG- -5'
20403 3' -67.9 NC_004687.1 + 10452 0.66 0.406284
Target:  5'- gCUGCCCACgCUgGCCaCCCGgguCCGCgacaucaUGCa -3'
miRNA:   3'- -GACGGGUG-GGgCGG-GGGC---GGCG-------ACGg -5'
20403 3' -67.9 NC_004687.1 + 48116 0.66 0.399163
Target:  5'- aCUGCgUgaagGCCaCCGCCCCggCGUCGCgaccGCCc -3'
miRNA:   3'- -GACGgG----UGG-GGCGGGG--GCGGCGa---CGG- -5'
20403 3' -67.9 NC_004687.1 + 93467 0.66 0.399163
Target:  5'- -aGCCCGCCgUGUCacgucggaaCCGCUGCacGCCg -3'
miRNA:   3'- gaCGGGUGGgGCGGg--------GGCGGCGa-CGG- -5'
20403 3' -67.9 NC_004687.1 + 125951 0.66 0.399163
Target:  5'- -gGCCUACCUggacaaGUgCCCGCCGgUcGCCa -3'
miRNA:   3'- gaCGGGUGGGg-----CGgGGGCGGCgA-CGG- -5'
20403 3' -67.9 NC_004687.1 + 27133 0.66 0.399163
Target:  5'- -gGCCUucgagACCCUGCUCgUCGCCGacggGCCg -3'
miRNA:   3'- gaCGGG-----UGGGGCGGG-GGCGGCga--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.