miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20403 5' -52.4 NC_004687.1 + 10336 0.66 0.988696
Target:  5'- cCGgUGcGGGCAGCGGCAcUCCGg--- -3'
miRNA:   3'- aGCaGCuCCUGUUGCCGU-AGGCauac -5'
20403 5' -52.4 NC_004687.1 + 68163 0.66 0.987194
Target:  5'- aCGUCGAcugGGGCAACGGa--CCGg--- -3'
miRNA:   3'- aGCAGCU---CCUGUUGCCguaGGCauac -5'
20403 5' -52.4 NC_004687.1 + 138623 0.66 0.987194
Target:  5'- cUCGUUGAGagcGACAGCGGC--CCGg--- -3'
miRNA:   3'- -AGCAGCUC---CUGUUGCCGuaGGCauac -5'
20403 5' -52.4 NC_004687.1 + 44639 0.66 0.98537
Target:  5'- aUCGUccagucucCGAGGGCGGCGGUGccaccaacggcacUCCGgcaggAUGg -3'
miRNA:   3'- -AGCA--------GCUCCUGUUGCCGU-------------AGGCa----UAC- -5'
20403 5' -52.4 NC_004687.1 + 146224 0.66 0.983735
Target:  5'- -gGUCGAGcGCAACGGCAUggugcuggCCGg--- -3'
miRNA:   3'- agCAGCUCcUGUUGCCGUA--------GGCauac -5'
20403 5' -52.4 NC_004687.1 + 63845 0.66 0.983735
Target:  5'- -gGUCGAGGuugGCggUGGCGUucauggucucucCUGUGUGa -3'
miRNA:   3'- agCAGCUCC---UGuuGCCGUA------------GGCAUAC- -5'
20403 5' -52.4 NC_004687.1 + 34322 0.66 0.983735
Target:  5'- -gGcCGAGaGCAAUGGCcUCCGUGUc -3'
miRNA:   3'- agCaGCUCcUGUUGCCGuAGGCAUAc -5'
20403 5' -52.4 NC_004687.1 + 87593 0.66 0.98176
Target:  5'- cUCGUC--GGACAAcaccguCGGCGUCCGg--- -3'
miRNA:   3'- -AGCAGcuCCUGUU------GCCGUAGGCauac -5'
20403 5' -52.4 NC_004687.1 + 70398 0.66 0.98176
Target:  5'- aUCGUCGcGGGCAcCGGCGcccagCCGa--- -3'
miRNA:   3'- -AGCAGCuCCUGUuGCCGUa----GGCauac -5'
20403 5' -52.4 NC_004687.1 + 63797 0.66 0.98176
Target:  5'- gUCGUCGucGGGCAcCGGCGaCCGc--- -3'
miRNA:   3'- -AGCAGCu-CCUGUuGCCGUaGGCauac -5'
20403 5' -52.4 NC_004687.1 + 40925 0.66 0.98176
Target:  5'- gUCGUCGAGGugcuCGACaGCAacuucUCCGa--- -3'
miRNA:   3'- -AGCAGCUCCu---GUUGcCGU-----AGGCauac -5'
20403 5' -52.4 NC_004687.1 + 36002 0.66 0.98176
Target:  5'- aCGUCGAGGcCAAgGGCGUgcUCGa--- -3'
miRNA:   3'- aGCAGCUCCuGUUgCCGUA--GGCauac -5'
20403 5' -52.4 NC_004687.1 + 71246 0.66 0.98176
Target:  5'- cCGaaUCGGGGGCAGCGGCuuuaCCacgAUGa -3'
miRNA:   3'- aGC--AGCUCCUGUUGCCGua--GGca-UAC- -5'
20403 5' -52.4 NC_004687.1 + 102334 0.66 0.97961
Target:  5'- cUCGUCGAGGACGAacaGGac-CCGc--- -3'
miRNA:   3'- -AGCAGCUCCUGUUg--CCguaGGCauac -5'
20403 5' -52.4 NC_004687.1 + 51564 0.66 0.97961
Target:  5'- gCGUCGuGGACAGCucGGCucagCCGg--- -3'
miRNA:   3'- aGCAGCuCCUGUUG--CCGua--GGCauac -5'
20403 5' -52.4 NC_004687.1 + 7924 0.66 0.97961
Target:  5'- cUCGUCGAGGua---GGCGUCCu---- -3'
miRNA:   3'- -AGCAGCUCCuguugCCGUAGGcauac -5'
20403 5' -52.4 NC_004687.1 + 40559 0.67 0.974754
Target:  5'- cCGUCGAGGAUcgaGGUcucUCCGUGg- -3'
miRNA:   3'- aGCAGCUCCUGuugCCGu--AGGCAUac -5'
20403 5' -52.4 NC_004687.1 + 15723 0.67 0.974754
Target:  5'- gUCGcCGAGGcCAACGGCuggacccgCCGgguUGa -3'
miRNA:   3'- -AGCaGCUCCuGUUGCCGua------GGCau-AC- -5'
20403 5' -52.4 NC_004687.1 + 96005 0.67 0.972032
Target:  5'- -aGUCcAGGGCAGCGGUuguucguaGUCCGgguUGg -3'
miRNA:   3'- agCAGcUCCUGUUGCCG--------UAGGCau-AC- -5'
20403 5' -52.4 NC_004687.1 + 43977 0.67 0.972032
Target:  5'- gCGUCGAccuccaGGACGGCgucgaaGGUGUCCGgcUGa -3'
miRNA:   3'- aGCAGCU------CCUGUUG------CCGUAGGCauAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.