Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20404 | 5' | -56.9 | NC_004687.1 | + | 155665 | 0.98 | 0.012541 |
Target: 5'- cCACCUCCAGGUGAACCAGCCGAUGu- -3' miRNA: 3'- -GUGGAGGUCCACUUGGUCGGCUACca -5' |
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20404 | 5' | -56.9 | NC_004687.1 | + | 117531 | 0.76 | 0.348656 |
Target: 5'- gCGCC-CCGGGUGGcCCAGgCGGUGGg -3' miRNA: 3'- -GUGGaGGUCCACUuGGUCgGCUACCa -5' |
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20404 | 5' | -56.9 | NC_004687.1 | + | 39456 | 0.74 | 0.419762 |
Target: 5'- cCGCCUCCGGGUGcuCCcggcgauccugcuGCCGGUGGc -3' miRNA: 3'- -GUGGAGGUCCACuuGGu------------CGGCUACCa -5' |
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20404 | 5' | -56.9 | NC_004687.1 | + | 75660 | 0.73 | 0.486545 |
Target: 5'- cCGCCgCCGGGUGAcuacaacGCCAGCaccgGAUGGg -3' miRNA: 3'- -GUGGaGGUCCACU-------UGGUCGg---CUACCa -5' |
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20404 | 5' | -56.9 | NC_004687.1 | + | 57624 | 0.72 | 0.55595 |
Target: 5'- -uUCUCCAGGaucaGGGCCAGCaGGUGGUa -3' miRNA: 3'- guGGAGGUCCa---CUUGGUCGgCUACCA- -5' |
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20404 | 5' | -56.9 | NC_004687.1 | + | 144810 | 0.72 | 0.55595 |
Target: 5'- uCGCCguUCCAGuGUcgcugGAACCAGCCGAUcGGg -3' miRNA: 3'- -GUGG--AGGUC-CA-----CUUGGUCGGCUA-CCa -5' |
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20404 | 5' | -56.9 | NC_004687.1 | + | 142647 | 0.7 | 0.641208 |
Target: 5'- gGCCUCCAGGUcggccacgucaugcuGGGCCucGCgGAUGGc -3' miRNA: 3'- gUGGAGGUCCA---------------CUUGGu-CGgCUACCa -5' |
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20404 | 5' | -56.9 | NC_004687.1 | + | 90271 | 0.7 | 0.651412 |
Target: 5'- aGCCUCCGGGUGGAUcagguugagcuugcgCAGCagcgCGGUGGc -3' miRNA: 3'- gUGGAGGUCCACUUG---------------GUCG----GCUACCa -5' |
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20404 | 5' | -56.9 | NC_004687.1 | + | 26404 | 0.7 | 0.657528 |
Target: 5'- gACCUCCuGGUGGGCCuccucGUCGcUGGg -3' miRNA: 3'- gUGGAGGuCCACUUGGu----CGGCuACCa -5' |
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20404 | 5' | -56.9 | NC_004687.1 | + | 39747 | 0.69 | 0.707035 |
Target: 5'- aACCaUCCGGGUGGcaaccucaagcccGCCAGCCGGa--- -3' miRNA: 3'- gUGG-AGGUCCACU-------------UGGUCGGCUacca -5' |
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20404 | 5' | -56.9 | NC_004687.1 | + | 121477 | 0.69 | 0.708033 |
Target: 5'- uGgCUCaaggacaAGGUGGagGCCAGCUGAUGGa -3' miRNA: 3'- gUgGAGg------UCCACU--UGGUCGGCUACCa -5' |
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20404 | 5' | -56.9 | NC_004687.1 | + | 153293 | 0.69 | 0.708033 |
Target: 5'- uCACCUCCGGG-GAGCguGUCGAg--- -3' miRNA: 3'- -GUGGAGGUCCaCUUGguCGGCUacca -5' |
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20404 | 5' | -56.9 | NC_004687.1 | + | 128104 | 0.69 | 0.717978 |
Target: 5'- cCGCCUCCGGcaGAggcgcccaaGCC-GCCGGUGGUc -3' miRNA: 3'- -GUGGAGGUCcaCU---------UGGuCGGCUACCA- -5' |
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20404 | 5' | -56.9 | NC_004687.1 | + | 134443 | 0.69 | 0.727849 |
Target: 5'- gCACCUCCAGGacGAGCUccugGGUCGGUGu- -3' miRNA: 3'- -GUGGAGGUCCa-CUUGG----UCGGCUACca -5' |
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20404 | 5' | -56.9 | NC_004687.1 | + | 111847 | 0.69 | 0.727849 |
Target: 5'- cCGCCUgggCCuGGcGGGCCaAGCCGGUGGc -3' miRNA: 3'- -GUGGA---GGuCCaCUUGG-UCGGCUACCa -5' |
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20404 | 5' | -56.9 | NC_004687.1 | + | 142499 | 0.68 | 0.746371 |
Target: 5'- gGCCUCCAaggcggcGGUGGACgCcGCCGAUGc- -3' miRNA: 3'- gUGGAGGU-------CCACUUG-GuCGGCUACca -5' |
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20404 | 5' | -56.9 | NC_004687.1 | + | 89042 | 0.68 | 0.754066 |
Target: 5'- aCACCUCCAcGGUGAccgagcgcaaguucACCA-CCGAgacccgGGUg -3' miRNA: 3'- -GUGGAGGU-CCACU--------------UGGUcGGCUa-----CCA- -5' |
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20404 | 5' | -56.9 | NC_004687.1 | + | 119002 | 0.68 | 0.756934 |
Target: 5'- aGCCUCCGGGaGGACCGGUgCGGUucauccGGUc -3' miRNA: 3'- gUGGAGGUCCaCUUGGUCG-GCUA------CCA- -5' |
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20404 | 5' | -56.9 | NC_004687.1 | + | 52390 | 0.68 | 0.766421 |
Target: 5'- aGCC-CCAGGccuGCCAGCCGuagGGg -3' miRNA: 3'- gUGGaGGUCCacuUGGUCGGCua-CCa -5' |
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20404 | 5' | -56.9 | NC_004687.1 | + | 31419 | 0.68 | 0.794134 |
Target: 5'- gCACCUCgCcGGUGAGCUcGUCGAUGcGg -3' miRNA: 3'- -GUGGAG-GuCCACUUGGuCGGCUAC-Ca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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