miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20404 5' -56.9 NC_004687.1 + 146074 0.67 0.817963
Target:  5'- gACCgcgcgCCAGGUcGAggaucucuaccgcuGgCAGCCGGUGGg -3'
miRNA:   3'- gUGGa----GGUCCA-CU--------------UgGUCGGCUACCa -5'
20404 5' -56.9 NC_004687.1 + 52993 0.67 0.811897
Target:  5'- aUACCUgCAGGU---CgAGCCGGUGGa -3'
miRNA:   3'- -GUGGAgGUCCAcuuGgUCGGCUACCa -5'
20404 5' -56.9 NC_004687.1 + 77987 0.67 0.811897
Target:  5'- cCGCC-CCGGGUGAcGCCgAGCUGAcguccggccUGGg -3'
miRNA:   3'- -GUGGaGGUCCACU-UGG-UCGGCU---------ACCa -5'
20404 5' -56.9 NC_004687.1 + 63603 0.67 0.803092
Target:  5'- uCGCCUCCAucaugucgacGGUGGACUggcucucauGGCCGcUGGc -3'
miRNA:   3'- -GUGGAGGU----------CCACUUGG---------UCGGCuACCa -5'
20404 5' -56.9 NC_004687.1 + 31419 0.68 0.794134
Target:  5'- gCACCUCgCcGGUGAGCUcGUCGAUGcGg -3'
miRNA:   3'- -GUGGAG-GuCCACUUGGuCGGCUAC-Ca -5'
20404 5' -56.9 NC_004687.1 + 52390 0.68 0.766421
Target:  5'- aGCC-CCAGGccuGCCAGCCGuagGGg -3'
miRNA:   3'- gUGGaGGUCCacuUGGUCGGCua-CCa -5'
20404 5' -56.9 NC_004687.1 + 119002 0.68 0.756934
Target:  5'- aGCCUCCGGGaGGACCGGUgCGGUucauccGGUc -3'
miRNA:   3'- gUGGAGGUCCaCUUGGUCG-GCUA------CCA- -5'
20404 5' -56.9 NC_004687.1 + 89042 0.68 0.754066
Target:  5'- aCACCUCCAcGGUGAccgagcgcaaguucACCA-CCGAgacccgGGUg -3'
miRNA:   3'- -GUGGAGGU-CCACU--------------UGGUcGGCUa-----CCA- -5'
20404 5' -56.9 NC_004687.1 + 142499 0.68 0.746371
Target:  5'- gGCCUCCAaggcggcGGUGGACgCcGCCGAUGc- -3'
miRNA:   3'- gUGGAGGU-------CCACUUG-GuCGGCUACca -5'
20404 5' -56.9 NC_004687.1 + 134443 0.69 0.727849
Target:  5'- gCACCUCCAGGacGAGCUccugGGUCGGUGu- -3'
miRNA:   3'- -GUGGAGGUCCa-CUUGG----UCGGCUACca -5'
20404 5' -56.9 NC_004687.1 + 111847 0.69 0.727849
Target:  5'- cCGCCUgggCCuGGcGGGCCaAGCCGGUGGc -3'
miRNA:   3'- -GUGGA---GGuCCaCUUGG-UCGGCUACCa -5'
20404 5' -56.9 NC_004687.1 + 128104 0.69 0.717978
Target:  5'- cCGCCUCCGGcaGAggcgcccaaGCC-GCCGGUGGUc -3'
miRNA:   3'- -GUGGAGGUCcaCU---------UGGuCGGCUACCA- -5'
20404 5' -56.9 NC_004687.1 + 153293 0.69 0.708033
Target:  5'- uCACCUCCGGG-GAGCguGUCGAg--- -3'
miRNA:   3'- -GUGGAGGUCCaCUUGguCGGCUacca -5'
20404 5' -56.9 NC_004687.1 + 121477 0.69 0.708033
Target:  5'- uGgCUCaaggacaAGGUGGagGCCAGCUGAUGGa -3'
miRNA:   3'- gUgGAGg------UCCACU--UGGUCGGCUACCa -5'
20404 5' -56.9 NC_004687.1 + 39747 0.69 0.707035
Target:  5'- aACCaUCCGGGUGGcaaccucaagcccGCCAGCCGGa--- -3'
miRNA:   3'- gUGG-AGGUCCACU-------------UGGUCGGCUacca -5'
20404 5' -56.9 NC_004687.1 + 26404 0.7 0.657528
Target:  5'- gACCUCCuGGUGGGCCuccucGUCGcUGGg -3'
miRNA:   3'- gUGGAGGuCCACUUGGu----CGGCuACCa -5'
20404 5' -56.9 NC_004687.1 + 90271 0.7 0.651412
Target:  5'- aGCCUCCGGGUGGAUcagguugagcuugcgCAGCagcgCGGUGGc -3'
miRNA:   3'- gUGGAGGUCCACUUG---------------GUCG----GCUACCa -5'
20404 5' -56.9 NC_004687.1 + 142647 0.7 0.641208
Target:  5'- gGCCUCCAGGUcggccacgucaugcuGGGCCucGCgGAUGGc -3'
miRNA:   3'- gUGGAGGUCCA---------------CUUGGu-CGgCUACCa -5'
20404 5' -56.9 NC_004687.1 + 57624 0.72 0.55595
Target:  5'- -uUCUCCAGGaucaGGGCCAGCaGGUGGUa -3'
miRNA:   3'- guGGAGGUCCa---CUUGGUCGgCUACCA- -5'
20404 5' -56.9 NC_004687.1 + 144810 0.72 0.55595
Target:  5'- uCGCCguUCCAGuGUcgcugGAACCAGCCGAUcGGg -3'
miRNA:   3'- -GUGG--AGGUC-CA-----CUUGGUCGGCUA-CCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.