Results 41 - 60 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20407 | 5' | -63.5 | NC_004688.1 | + | 26115 | 0.72 | 0.214078 |
Target: 5'- aCCGCCCgCgGCGCCcaACCCGCcgaacagGCCg -3' miRNA: 3'- aGGCGGG-G-CGCGGugUGGGCGaa-----CGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 5946 | 0.73 | 0.199226 |
Target: 5'- -aUGCUcuCCGCGCCguGCGCCUGCUUGgCCu -3' miRNA: 3'- agGCGG--GGCGCGG--UGUGGGCGAAC-GG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 26354 | 0.74 | 0.163949 |
Target: 5'- cCCGCgCCCaugGCGCCcuggauggcaGCGCCCGCaagGCCa -3' miRNA: 3'- aGGCG-GGG---CGCGG----------UGUGGGCGaa-CGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 68394 | 0.74 | 0.159956 |
Target: 5'- gUCCaGCaCUCGCcaggcgagGCCAUACCCGCUaccUGCCa -3' miRNA: 3'- -AGG-CG-GGGCG--------CGGUGUGGGCGA---ACGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 58506 | 0.74 | 0.148501 |
Target: 5'- -gUGCCCUGCGCCGCagguuuucugGCCCaGCUcgGCCa -3' miRNA: 3'- agGCGGGGCGCGGUG----------UGGG-CGAa-CGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 20848 | 0.7 | 0.303014 |
Target: 5'- cCUGCaggCCGCGCCaguccGCACCCucGCggUGCCa -3' miRNA: 3'- aGGCGg--GGCGCGG-----UGUGGG--CGa-ACGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 41949 | 0.7 | 0.303014 |
Target: 5'- cCCGCCuuGCggGCCuuguCCCGgUUGCCc -3' miRNA: 3'- aGGCGGggCG--CGGugu-GGGCgAACGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 15745 | 0.68 | 0.368806 |
Target: 5'- cCCGCCCCGUcaaCCAaacuucaCCGCUcgGCCa -3' miRNA: 3'- aGGCGGGGCGc--GGUgug----GGCGAa-CGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 58821 | 0.68 | 0.361032 |
Target: 5'- aUCUGCCUCGuCGCCgGCGCCgGg--GCCa -3' miRNA: 3'- -AGGCGGGGC-GCGG-UGUGGgCgaaCGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 81035 | 0.68 | 0.361032 |
Target: 5'- gCCGCCaCCGUGCC-CACgagagGCUUGCg -3' miRNA: 3'- aGGCGG-GGCGCGGuGUGgg---CGAACGg -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 23984 | 0.68 | 0.361032 |
Target: 5'- gCCGCCa-GCGCCccggagAUGCCCGCcccgGCCu -3' miRNA: 3'- aGGCGGggCGCGG------UGUGGGCGaa--CGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 38689 | 0.69 | 0.353372 |
Target: 5'- cCCGCUCCGcCGCCGC-CgCCGCg-GCg -3' miRNA: 3'- aGGCGGGGC-GCGGUGuG-GGCGaaCGg -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 109849 | 0.69 | 0.337664 |
Target: 5'- aUCGCCaUCGUGCCcaucgucGCACUguugaCGCUUGCCg -3' miRNA: 3'- aGGCGG-GGCGCGG-------UGUGG-----GCGAACGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 64093 | 0.69 | 0.331089 |
Target: 5'- cCCGCCCCuuCGCUguaaugGCAUgCGaCUUGCCa -3' miRNA: 3'- aGGCGGGGc-GCGG------UGUGgGC-GAACGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 53215 | 0.69 | 0.328918 |
Target: 5'- -gCGCCaggugggcuacggaCCGCGgUACGCCCGCaucgGCCg -3' miRNA: 3'- agGCGG--------------GGCGCgGUGUGGGCGaa--CGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 9474 | 0.69 | 0.323894 |
Target: 5'- aUCCGCCUCGCGCUggaggaagucaAC-CuuGCgcaUGCCc -3' miRNA: 3'- -AGGCGGGGCGCGG-----------UGuGggCGa--ACGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 59968 | 0.69 | 0.323894 |
Target: 5'- -gUGCCaCCGCGCCggcgaccaaGCGCCCGgUUGgCu -3' miRNA: 3'- agGCGG-GGCGCGG---------UGUGGGCgAACgG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 85286 | 0.69 | 0.323894 |
Target: 5'- uUCCGCCUCG-GCCu--CCCGCa-GCCu -3' miRNA: 3'- -AGGCGGGGCgCGGuguGGGCGaaCGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 98127 | 0.69 | 0.321759 |
Target: 5'- -gCGCCCCcucuuucgggcggGCGUCGCACCCcggauucgcacaCUUGCCg -3' miRNA: 3'- agGCGGGG-------------CGCGGUGUGGGc-----------GAACGG- -5' |
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20407 | 5' | -63.5 | NC_004688.1 | + | 68648 | 0.69 | 0.316817 |
Target: 5'- gCUGCCuCUGCGUCuauccgauaGCCgCGCUUGCCc -3' miRNA: 3'- aGGCGG-GGCGCGGug-------UGG-GCGAACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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