miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20409 5' -55.7 NC_004688.1 + 70740 0.66 0.87965
Target:  5'- aCCAGCCgu-GUGGa-GGCCCGUcaccgUGUCa -3'
miRNA:   3'- -GGUUGGagcCACCgcUCGGGUA-----ACAG- -5'
20409 5' -55.7 NC_004688.1 + 11120 0.66 0.864725
Target:  5'- gCGACCUCGGUcaGCacGCCCAggUUGUUg -3'
miRNA:   3'- gGUUGGAGCCAc-CGcuCGGGU--AACAG- -5'
20409 5' -55.7 NC_004688.1 + 70050 0.66 0.840717
Target:  5'- aCCGA-UUCGGUGGCGAauucaaucGCCuCAUccagGUCg -3'
miRNA:   3'- -GGUUgGAGCCACCGCU--------CGG-GUAa---CAG- -5'
20409 5' -55.7 NC_004688.1 + 20531 0.66 0.840717
Target:  5'- uCCAggGCCUUGaUGGUGAuGCCauCGUUGUCc -3'
miRNA:   3'- -GGU--UGGAGCcACCGCU-CGG--GUAACAG- -5'
20409 5' -55.7 NC_004688.1 + 42007 0.67 0.83231
Target:  5'- uCCGGCCUgGGcGGCGGGgUCGccgGUCc -3'
miRNA:   3'- -GGUUGGAgCCaCCGCUCgGGUaa-CAG- -5'
20409 5' -55.7 NC_004688.1 + 82446 0.67 0.823713
Target:  5'- gUCGuCCUUGGUGGUGcuCCaGUUGUCa -3'
miRNA:   3'- -GGUuGGAGCCACCGCucGGgUAACAG- -5'
20409 5' -55.7 NC_004688.1 + 1463 0.67 0.823713
Target:  5'- -gAACCUCGG-GGCucGGUCCAUaaagGUCa -3'
miRNA:   3'- ggUUGGAGCCaCCGc-UCGGGUAa---CAG- -5'
20409 5' -55.7 NC_004688.1 + 78537 0.67 0.823713
Target:  5'- gCCGAUUcgaUGGUGGCcucgaccgaguuGAGCCCGUcGUCg -3'
miRNA:   3'- -GGUUGGa--GCCACCG------------CUCGGGUAaCAG- -5'
20409 5' -55.7 NC_004688.1 + 75867 0.68 0.749151
Target:  5'- cCCAGCUUCGcG-GGCuuGGGCCUAUUGa- -3'
miRNA:   3'- -GGUUGGAGC-CaCCG--CUCGGGUAACag -5'
20409 5' -55.7 NC_004688.1 + 93219 0.7 0.636462
Target:  5'- aCCGACCUCGGcgaagggcucGGCGGGCuugCCAcgauggcggaccUUGUCa -3'
miRNA:   3'- -GGUUGGAGCCa---------CCGCUCG---GGU------------AACAG- -5'
20409 5' -55.7 NC_004688.1 + 9711 0.72 0.533134
Target:  5'- gUCGGCCUCGG-GGuCGAcGCCCAUU-UCg -3'
miRNA:   3'- -GGUUGGAGCCaCC-GCU-CGGGUAAcAG- -5'
20409 5' -55.7 NC_004688.1 + 3927 1.12 0.001391
Target:  5'- gCCAACCUCGGUGGCGAGCCCAUUGUCa -3'
miRNA:   3'- -GGUUGGAGCCACCGCUCGGGUAACAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.