miRNA display CGI


Results 1 - 20 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2041 5' -54.1 NC_001347.2 + 128318 0.66 0.984979
Target:  5'- cUUG-CAGCGGCUCgucgucaCCCGCGuGUGg -3'
miRNA:   3'- -AGCgGUCGCUGAGaaaa---GGGCGC-UAC- -5'
2041 5' -54.1 NC_001347.2 + 174143 0.66 0.984979
Target:  5'- cCGUcccuCAGCGACg----UCCCGCGcgGa -3'
miRNA:   3'- aGCG----GUCGCUGagaaaAGGGCGCuaC- -5'
2041 5' -54.1 NC_001347.2 + 110152 0.66 0.984979
Target:  5'- cCGCCAGCGGaagCUUUggucgCCUGCa--- -3'
miRNA:   3'- aGCGGUCGCUga-GAAAa----GGGCGcuac -5'
2041 5' -54.1 NC_001347.2 + 52954 0.66 0.984979
Target:  5'- -aGCguGCGGCUCUUUgccaacuagCCUGCGu-- -3'
miRNA:   3'- agCGguCGCUGAGAAAa--------GGGCGCuac -5'
2041 5' -54.1 NC_001347.2 + 53551 0.66 0.984979
Target:  5'- aCuaCAGCGugUCUUUUCaggUGCGAUu -3'
miRNA:   3'- aGcgGUCGCugAGAAAAGg--GCGCUAc -5'
2041 5' -54.1 NC_001347.2 + 196150 0.66 0.981208
Target:  5'- cUGCCGGCGGCcCUgug-CCGCGGg- -3'
miRNA:   3'- aGCGGUCGCUGaGAaaagGGCGCUac -5'
2041 5' -54.1 NC_001347.2 + 189136 0.66 0.979075
Target:  5'- -gGCCGuCGACUCcacgCgCCGCGGUGa -3'
miRNA:   3'- agCGGUcGCUGAGaaaaG-GGCGCUAC- -5'
2041 5' -54.1 NC_001347.2 + 173999 0.66 0.979075
Target:  5'- gCGCaCGGCG-Cgg---UCCCGUGAUGg -3'
miRNA:   3'- aGCG-GUCGCuGagaaaAGGGCGCUAC- -5'
2041 5' -54.1 NC_001347.2 + 208131 0.66 0.978853
Target:  5'- cUCGCCGGCGcucgucaucugacAUUCcgUUUUCCUGCcGUGa -3'
miRNA:   3'- -AGCGGUCGC-------------UGAG--AAAAGGGCGcUAC- -5'
2041 5' -54.1 NC_001347.2 + 153130 0.66 0.976768
Target:  5'- -aG-CAGaugGACUCUUUgCCCGUGAUGg -3'
miRNA:   3'- agCgGUCg--CUGAGAAAaGGGCGCUAC- -5'
2041 5' -54.1 NC_001347.2 + 759 0.66 0.976768
Target:  5'- -aGCCAgcuGCGugUCg---CCCGCGGc- -3'
miRNA:   3'- agCGGU---CGCugAGaaaaGGGCGCUac -5'
2041 5' -54.1 NC_001347.2 + 210019 0.67 0.97428
Target:  5'- cCGCCGGUguuggGAC-CgcUUCCCGCGGg- -3'
miRNA:   3'- aGCGGUCG-----CUGaGaaAAGGGCGCUac -5'
2041 5' -54.1 NC_001347.2 + 21632 0.67 0.972697
Target:  5'- gUCGCCGcaggccuuugucggcGCGGCUCUUcucgCCCugGCGGUa -3'
miRNA:   3'- -AGCGGU---------------CGCUGAGAAaa--GGG--CGCUAc -5'
2041 5' -54.1 NC_001347.2 + 208847 0.67 0.971604
Target:  5'- gCGCCAGCGcC-Cg---CCgGCGAUGu -3'
miRNA:   3'- aGCGGUCGCuGaGaaaaGGgCGCUAC- -5'
2041 5' -54.1 NC_001347.2 + 228721 0.67 0.971604
Target:  5'- gUCGCCAccgccGCGGCggaUUUCCgCGCGggGg -3'
miRNA:   3'- -AGCGGU-----CGCUGagaAAAGG-GCGCuaC- -5'
2041 5' -54.1 NC_001347.2 + 128964 0.67 0.962382
Target:  5'- cCGCCAGCGAacaccaUCUCGCGGa- -3'
miRNA:   3'- aGCGGUCGCUgagaaaAGGGCGCUac -5'
2041 5' -54.1 NC_001347.2 + 159482 0.67 0.962382
Target:  5'- -gGCgCGGCGGCUgCUgaacUCgCGCGAUGg -3'
miRNA:   3'- agCG-GUCGCUGA-GAaa--AGgGCGCUAC- -5'
2041 5' -54.1 NC_001347.2 + 184227 0.67 0.962382
Target:  5'- gUCGCUAGCGugUCgcagcgUUCgCCGCc--- -3'
miRNA:   3'- -AGCGGUCGCugAGaa----AAG-GGCGcuac -5'
2041 5' -54.1 NC_001347.2 + 196458 0.68 0.95126
Target:  5'- -gGCCGGCGACg--UggCCCGCGu-- -3'
miRNA:   3'- agCGGUCGCUGagaAaaGGGCGCuac -5'
2041 5' -54.1 NC_001347.2 + 106769 0.68 0.942734
Target:  5'- gCGcCCGGCcuucuCUCUUUUCCCGCa--- -3'
miRNA:   3'- aGC-GGUCGcu---GAGAAAAGGGCGcuac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.