miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20410 5' -52.9 NC_004688.1 + 84134 0.66 0.948109
Target:  5'- gGAGAcauccacGCC-CGUGUAGGCGaugGAcUCCa -3'
miRNA:   3'- aCUCU-------CGGaGCACGUCCGUg--UUaAGG- -5'
20410 5' -52.9 NC_004688.1 + 9071 0.67 0.923012
Target:  5'- cGAGAGCCUCcggaagggaGcGCAGGC-CGAcgCUg -3'
miRNA:   3'- aCUCUCGGAG---------CaCGUCCGuGUUaaGG- -5'
20410 5' -52.9 NC_004688.1 + 2853 0.67 0.923012
Target:  5'- -cGGGGCC-C-UGCAGGCGCAaucgagGUUCUc -3'
miRNA:   3'- acUCUCGGaGcACGUCCGUGU------UAAGG- -5'
20410 5' -52.9 NC_004688.1 + 799 0.67 0.917115
Target:  5'- cGGGAGaCCUCGUGaucacccuggAGGaCGCcAUUCCc -3'
miRNA:   3'- aCUCUC-GGAGCACg---------UCC-GUGuUAAGG- -5'
20410 5' -52.9 NC_004688.1 + 86235 0.67 0.907135
Target:  5'- cGGGAGCUcgUCGagggGCAGGCccaGCAcgccugccgcauacgAUUCCa -3'
miRNA:   3'- aCUCUCGG--AGCa---CGUCCG---UGU---------------UAAGG- -5'
20410 5' -52.9 NC_004688.1 + 12902 0.68 0.852611
Target:  5'- cGAGaAGUCUCGgccggGCAGGUGCucUUCa -3'
miRNA:   3'- aCUC-UCGGAGCa----CGUCCGUGuuAAGg -5'
20410 5' -52.9 NC_004688.1 + 95550 0.69 0.826929
Target:  5'- gGAGcGGCCUCcgaaGCuuGGGCugGGUUCCu -3'
miRNA:   3'- aCUC-UCGGAGca--CG--UCCGugUUAAGG- -5'
20410 5' -52.9 NC_004688.1 + 7623 0.7 0.780354
Target:  5'- ----cGCCUCGUcGCGGGCACuGAUguagCCg -3'
miRNA:   3'- acucuCGGAGCA-CGUCCGUG-UUAa---GG- -5'
20410 5' -52.9 NC_004688.1 + 9682 0.73 0.602501
Target:  5'- cGAGAGCCUCGcGaAGGCugAug-CCg -3'
miRNA:   3'- aCUCUCGGAGCaCgUCCGugUuaaGG- -5'
20410 5' -52.9 NC_004688.1 + 75983 0.75 0.528569
Target:  5'- --uGAGCCUCGUcGCGGGuCGCA--UCCu -3'
miRNA:   3'- acuCUCGGAGCA-CGUCC-GUGUuaAGG- -5'
20410 5' -52.9 NC_004688.1 + 4654 1.12 0.002182
Target:  5'- uUGAGAGCCUCGUGCAGGCACAAUUCCu -3'
miRNA:   3'- -ACUCUCGGAGCACGUCCGUGUUAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.