miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20411 5' -53.9 NC_004688.1 + 101581 0.66 0.935753
Target:  5'- gGGGAgcaGGUCCacacgGCCGaUCUGGg -3'
miRNA:   3'- gUCCUag-CUAGGgaa--CGGCaAGACCg -5'
20411 5' -53.9 NC_004688.1 + 101394 0.66 0.925096
Target:  5'- aGGGAUCGGUgcggCCCUacGCUcugCUGGCu -3'
miRNA:   3'- gUCCUAGCUA----GGGAa-CGGcaaGACCG- -5'
20411 5' -53.9 NC_004688.1 + 91049 0.66 0.925096
Target:  5'- gAGG--UGAUCcaCCUUGCCGgUCUGGa -3'
miRNA:   3'- gUCCuaGCUAG--GGAACGGCaAGACCg -5'
20411 5' -53.9 NC_004688.1 + 31456 0.66 0.919384
Target:  5'- cCAGGAgcugcucgUgGAUgCC-UGCUGUUCUGcGCg -3'
miRNA:   3'- -GUCCU--------AgCUAgGGaACGGCAAGAC-CG- -5'
20411 5' -53.9 NC_004688.1 + 65544 0.66 0.919384
Target:  5'- gCAGGGUgucaaagcCGAUCCa--GCCGUUCUcGGa -3'
miRNA:   3'- -GUCCUA--------GCUAGGgaaCGGCAAGA-CCg -5'
20411 5' -53.9 NC_004688.1 + 7041 0.66 0.913418
Target:  5'- cCAGcuGUCGAUCUCUUGuuGaUCgGGCc -3'
miRNA:   3'- -GUCc-UAGCUAGGGAACggCaAGaCCG- -5'
20411 5' -53.9 NC_004688.1 + 63686 0.67 0.898068
Target:  5'- -cGGAUCaacgccucaguuUCCCUUGCggCGUUCUuGGCg -3'
miRNA:   3'- guCCUAGcu----------AGGGAACG--GCAAGA-CCG- -5'
20411 5' -53.9 NC_004688.1 + 58932 0.67 0.879836
Target:  5'- -uGGAUgaccUGGUCCCUgcGCUGggagCUGGCg -3'
miRNA:   3'- guCCUA----GCUAGGGAa-CGGCaa--GACCG- -5'
20411 5' -53.9 NC_004688.1 + 48902 0.68 0.864723
Target:  5'- uGGGuucgCGGUCCCUgUGCCGcgg-GGCu -3'
miRNA:   3'- gUCCua--GCUAGGGA-ACGGCaagaCCG- -5'
20411 5' -53.9 NC_004688.1 + 84426 0.69 0.795914
Target:  5'- uCAGGaAUCGcUCCaggcgGCCcUUCUGGCg -3'
miRNA:   3'- -GUCC-UAGCuAGGgaa--CGGcAAGACCG- -5'
20411 5' -53.9 NC_004688.1 + 25706 0.71 0.706749
Target:  5'- uGGGGUCGAgUCCCgauucGCCGa--UGGCg -3'
miRNA:   3'- gUCCUAGCU-AGGGaa---CGGCaagACCG- -5'
20411 5' -53.9 NC_004688.1 + 11172 0.71 0.664922
Target:  5'- -cGGGUCGGUCacgaCCggcagGCCGUgcaUCUGGCc -3'
miRNA:   3'- guCCUAGCUAG----GGaa---CGGCA---AGACCG- -5'
20411 5' -53.9 NC_004688.1 + 75971 0.74 0.51854
Target:  5'- -cGGGUCGcAUCCUUgaaGCCGUUCUuGGUg -3'
miRNA:   3'- guCCUAGC-UAGGGAa--CGGCAAGA-CCG- -5'
20411 5' -53.9 NC_004688.1 + 4764 1.12 0.001894
Target:  5'- cCAGGAUCGAUCCCUUGCCGUUCUGGCg -3'
miRNA:   3'- -GUCCUAGCUAGGGAACGGCAAGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.