miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20413 3' -56.9 NC_004688.1 + 27003 0.66 0.838366
Target:  5'- uCCGUGACCCcggGCCACGgc--GCCa--- -3'
miRNA:   3'- -GGCACUGGG---UGGUGCaucuCGGaccu -5'
20413 3' -56.9 NC_004688.1 + 67055 0.66 0.838366
Target:  5'- aCCGUGGCCCACCA-----AGCa-GGAc -3'
miRNA:   3'- -GGCACUGGGUGGUgcaucUCGgaCCU- -5'
20413 3' -56.9 NC_004688.1 + 85594 0.66 0.821524
Target:  5'- cCCaUGACCCGCU-CGUccgccGCCUGGAg -3'
miRNA:   3'- -GGcACUGGGUGGuGCAucu--CGGACCU- -5'
20413 3' -56.9 NC_004688.1 + 57307 0.67 0.785819
Target:  5'- uUCGUGAucUCCACgGCGUgcggaaAGAGCUgGGAg -3'
miRNA:   3'- -GGCACU--GGGUGgUGCA------UCUCGGaCCU- -5'
20413 3' -56.9 NC_004688.1 + 6690 0.67 0.773708
Target:  5'- gCCGcGGCCCACCAggaucucuuCGgGGccccaggcggugauGGCCUGGAu -3'
miRNA:   3'- -GGCaCUGGGUGGU---------GCaUC--------------UCGGACCU- -5'
20413 3' -56.9 NC_004688.1 + 42891 0.68 0.728265
Target:  5'- cCCGUGACUcgaCACCuCGUAGAggcccucguaGCCgGGGg -3'
miRNA:   3'- -GGCACUGG---GUGGuGCAUCU----------CGGaCCU- -5'
20413 3' -56.9 NC_004688.1 + 51097 0.68 0.717326
Target:  5'- cCCGUGAaaccguuCCCGcCCGCGaGGGguggauucucccGCCUGGAu -3'
miRNA:   3'- -GGCACU-------GGGU-GGUGCaUCU------------CGGACCU- -5'
20413 3' -56.9 NC_004688.1 + 95929 0.68 0.698229
Target:  5'- gUCGUGcgcgcgccagGCCCACCGCaUGGAGCCg--- -3'
miRNA:   3'- -GGCAC----------UGGGUGGUGcAUCUCGGaccu -5'
20413 3' -56.9 NC_004688.1 + 17038 0.68 0.697218
Target:  5'- gCCGUuugGGCCCgACCagggcuuGCGUGGGGCaUGGAu -3'
miRNA:   3'- -GGCA---CUGGG-UGG-------UGCAUCUCGgACCU- -5'
20413 3' -56.9 NC_004688.1 + 13254 0.72 0.495844
Target:  5'- aCCGggagGACCUugcuauCCACGUAGGGUCcGGGg -3'
miRNA:   3'- -GGCa---CUGGGu-----GGUGCAUCUCGGaCCU- -5'
20413 3' -56.9 NC_004688.1 + 5836 1.11 0.001417
Target:  5'- cCCGUGACCCACCACGUAGAGCCUGGAg -3'
miRNA:   3'- -GGCACUGGGUGGUGCAUCUCGGACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.