miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20413 5' -57.8 NC_004688.1 + 39492 0.66 0.793818
Target:  5'- uGACCaGUGAaaUGUucgaccucgugaagGCCGCGUaCGcGGACGGc -3'
miRNA:   3'- -CUGG-CACU--ACG--------------UGGCGCA-GC-CCUGUC- -5'
20413 5' -57.8 NC_004688.1 + 24262 0.66 0.778148
Target:  5'- -cCCGUGGUaGCGCUGCGgcccgcguUCGGGuucCAGc -3'
miRNA:   3'- cuGGCACUA-CGUGGCGC--------AGCCCu--GUC- -5'
20413 5' -57.8 NC_004688.1 + 27712 0.66 0.768749
Target:  5'- gGGCCGUcuuGAUcucCGCCGCGgaggCGGGAUAc -3'
miRNA:   3'- -CUGGCA---CUAc--GUGGCGCa---GCCCUGUc -5'
20413 5' -57.8 NC_004688.1 + 30903 0.66 0.759227
Target:  5'- cGACCGgGGUcacCACCGgGUUGGGGguGg -3'
miRNA:   3'- -CUGGCaCUAc--GUGGCgCAGCCCUguC- -5'
20413 5' -57.8 NC_004688.1 + 41604 0.66 0.753459
Target:  5'- gGACCGUGGUGgaacgccaguuucgcCGCUGCGUUggcgGGGAUg- -3'
miRNA:   3'- -CUGGCACUAC---------------GUGGCGCAG----CCCUGuc -5'
20413 5' -57.8 NC_004688.1 + 73331 0.67 0.720099
Target:  5'- cGACCGUGAa--GCCGCGggagugcaGGGACu- -3'
miRNA:   3'- -CUGGCACUacgUGGCGCag------CCCUGuc -5'
20413 5' -57.8 NC_004688.1 + 41138 0.67 0.700041
Target:  5'- -cUCGaUGAUgGCGCCGCcgaauGUCGGGAaCAGg -3'
miRNA:   3'- cuGGC-ACUA-CGUGGCG-----CAGCCCU-GUC- -5'
20413 5' -57.8 NC_004688.1 + 36285 0.69 0.618217
Target:  5'- aACCGgGAgacugcgcGCGCgGCGUCGGGAaCAGc -3'
miRNA:   3'- cUGGCaCUa-------CGUGgCGCAGCCCU-GUC- -5'
20413 5' -57.8 NC_004688.1 + 73504 0.7 0.517203
Target:  5'- aGCCuUGGUGCacGCCGCGcccugcggCGGGGCAGc -3'
miRNA:   3'- cUGGcACUACG--UGGCGCa-------GCCCUGUC- -5'
20413 5' -57.8 NC_004688.1 + 20881 0.71 0.506444
Target:  5'- cGGCCGUGG-GCGCCGUGgcgaacagCGGGuaacccuGCAGg -3'
miRNA:   3'- -CUGGCACUaCGUGGCGCa-------GCCC-------UGUC- -5'
20413 5' -57.8 NC_004688.1 + 5801 1.09 0.001472
Target:  5'- cGACCGUGAUGCACCGCGUCGGGACAGa -3'
miRNA:   3'- -CUGGCACUACGUGGCGCAGCCCUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.