miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20414 5' -63.8 NC_004688.1 + 30388 0.66 0.490982
Target:  5'- gGUCGCCaggGCGCCCGGGaacaggucGcGGCCg -3'
miRNA:   3'- -UAGUGGgagCGCGGGCCCaa------C-CCGGg -5'
20414 5' -63.8 NC_004688.1 + 21515 0.66 0.490982
Target:  5'- uUCGCCCUUGauggugcgGCCCGGGaguucGGuGCCg -3'
miRNA:   3'- uAGUGGGAGCg-------CGGGCCCaa---CC-CGGg -5'
20414 5' -63.8 NC_004688.1 + 17059 0.66 0.48173
Target:  5'- aGUCGCCUUgGCGaCCuCGccgccguUUGGGCCCg -3'
miRNA:   3'- -UAGUGGGAgCGC-GG-GCcc-----AACCCGGG- -5'
20414 5' -63.8 NC_004688.1 + 58822 0.66 0.48173
Target:  5'- cAUCugCCUCGuCG-CCGGcGccgGGGCCa -3'
miRNA:   3'- -UAGugGGAGC-GCgGGCC-Caa-CCCGGg -5'
20414 5' -63.8 NC_004688.1 + 42703 0.66 0.48173
Target:  5'- cGUCGCCUUCGauguaGUCaaGGacgcaUUGGGCCCa -3'
miRNA:   3'- -UAGUGGGAGCg----CGGgcCC-----AACCCGGG- -5'
20414 5' -63.8 NC_004688.1 + 62898 0.66 0.463485
Target:  5'- cUCGCCCUUGUGaggCGGG-UGGGCg- -3'
miRNA:   3'- uAGUGGGAGCGCgg-GCCCaACCCGgg -5'
20414 5' -63.8 NC_004688.1 + 26351 0.66 0.454498
Target:  5'- -gCGCCCaUgGCGCCCuGGaUGGcagcGCCCg -3'
miRNA:   3'- uaGUGGG-AgCGCGGGcCCaACC----CGGG- -5'
20414 5' -63.8 NC_004688.1 + 33624 0.66 0.445608
Target:  5'- -cCGCCa--GCGCCCGGGUcgaGGGUg- -3'
miRNA:   3'- uaGUGGgagCGCGGGCCCAa--CCCGgg -5'
20414 5' -63.8 NC_004688.1 + 28526 0.67 0.436815
Target:  5'- --aGCCCUC-UGaCCCGGG-UGGGUCUu -3'
miRNA:   3'- uagUGGGAGcGC-GGGCCCaACCCGGG- -5'
20414 5' -63.8 NC_004688.1 + 38987 0.67 0.428123
Target:  5'- cUUACCCccgggCGCGCCgGGGauaacgacGGCCCc -3'
miRNA:   3'- uAGUGGGa----GCGCGGgCCCaac-----CCGGG- -5'
20414 5' -63.8 NC_004688.1 + 68912 0.67 0.419534
Target:  5'- -gCACCUUCaGaCGCCaaGGcgUGGGCCCu -3'
miRNA:   3'- uaGUGGGAG-C-GCGGgcCCa-ACCCGGG- -5'
20414 5' -63.8 NC_004688.1 + 57219 0.68 0.370274
Target:  5'- -cCACCgUCGuCGCaucacCCGGGcgGGGCCa -3'
miRNA:   3'- uaGUGGgAGC-GCG-----GGCCCaaCCCGGg -5'
20414 5' -63.8 NC_004688.1 + 46767 0.68 0.354755
Target:  5'- gAUCACUCgCGggauCGCCCGGc--GGGCCCu -3'
miRNA:   3'- -UAGUGGGaGC----GCGGGCCcaaCCCGGG- -5'
20414 5' -63.8 NC_004688.1 + 37311 0.69 0.325115
Target:  5'- uUCAaCCUCGuCG-CCGGuGUUGGuGCCCg -3'
miRNA:   3'- uAGUgGGAGC-GCgGGCC-CAACC-CGGG- -5'
20414 5' -63.8 NC_004688.1 + 24221 0.69 0.29535
Target:  5'- -gCGuCCgUCGCGCCCGuggggaccguugccGGUgcccgGGGCCCc -3'
miRNA:   3'- uaGU-GGgAGCGCGGGC--------------CCAa----CCCGGG- -5'
20414 5' -63.8 NC_004688.1 + 79854 0.72 0.204648
Target:  5'- -aCACCCacggGCGCCCGucGGccgagUGGGCCCa -3'
miRNA:   3'- uaGUGGGag--CGCGGGC--CCa----ACCCGGG- -5'
20414 5' -63.8 NC_004688.1 + 42868 0.72 0.195003
Target:  5'- --gGCCCUCGUaGCCgGGGgcUGGGCgCCa -3'
miRNA:   3'- uagUGGGAGCG-CGGgCCCa-ACCCG-GG- -5'
20414 5' -63.8 NC_004688.1 + 5986 1.09 0.000377
Target:  5'- cAUCACCCUCGCGCCCGGGUUGGGCCCg -3'
miRNA:   3'- -UAGUGGGAGCGCGGGCCCAACCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.