miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20415 3' -54.6 NC_004688.1 + 36093 0.66 0.888396
Target:  5'- cACggUUguGCGCC--ACgGCGGCCAu -3'
miRNA:   3'- cUGuaAAguCGCGGcuUGaCGCCGGU- -5'
20415 3' -54.6 NC_004688.1 + 9616 0.66 0.881178
Target:  5'- cACGUUUC-GCGCCGAuCUcGUcgaaGGCCAc -3'
miRNA:   3'- cUGUAAAGuCGCGGCUuGA-CG----CCGGU- -5'
20415 3' -54.6 NC_004688.1 + 24009 0.66 0.881178
Target:  5'- ----cUUCAGCcagGCCGGgauACUGaCGGCCGc -3'
miRNA:   3'- cuguaAAGUCG---CGGCU---UGAC-GCCGGU- -5'
20415 3' -54.6 NC_004688.1 + 107540 0.66 0.881178
Target:  5'- aACGUUgUCcGCuGCgGAACgUGCGGCCGa -3'
miRNA:   3'- cUGUAA-AGuCG-CGgCUUG-ACGCCGGU- -5'
20415 3' -54.6 NC_004688.1 + 88866 0.66 0.87372
Target:  5'- cGACAaugUCGGCuaCGAuCUGCaGCCAc -3'
miRNA:   3'- -CUGUaa-AGUCGcgGCUuGACGcCGGU- -5'
20415 3' -54.6 NC_004688.1 + 97282 0.66 0.87372
Target:  5'- aGCggUUUGGCGUCGu-CUGCGGCgAg -3'
miRNA:   3'- cUGuaAAGUCGCGGCuuGACGCCGgU- -5'
20415 3' -54.6 NC_004688.1 + 24292 0.66 0.865245
Target:  5'- aGGCccgcgUCAGCaggugccggGCCGAugcccgugguagcGCUGCGGCCc -3'
miRNA:   3'- -CUGuaa--AGUCG---------CGGCU-------------UGACGCCGGu -5'
20415 3' -54.6 NC_004688.1 + 83481 0.66 0.863675
Target:  5'- aGACAUcguuucggcccugcUUCAGCGCC-AACgagGCcGCCAa -3'
miRNA:   3'- -CUGUA--------------AAGUCGCGGcUUGa--CGcCGGU- -5'
20415 3' -54.6 NC_004688.1 + 15218 0.67 0.858106
Target:  5'- cGugGUcaaCGGCGCCGcGCcGCGGCaCAu -3'
miRNA:   3'- -CugUAaa-GUCGCGGCuUGaCGCCG-GU- -5'
20415 3' -54.6 NC_004688.1 + 78811 0.67 0.849962
Target:  5'- uGACuugccUAGC-CCGGGCgggGCGGCCAg -3'
miRNA:   3'- -CUGuaaa-GUCGcGGCUUGa--CGCCGGU- -5'
20415 3' -54.6 NC_004688.1 + 56869 0.67 0.841604
Target:  5'- gGACuaagccCGGCGUCGAuCaGCGGCCGa -3'
miRNA:   3'- -CUGuaaa--GUCGCGGCUuGaCGCCGGU- -5'
20415 3' -54.6 NC_004688.1 + 65688 0.67 0.841604
Target:  5'- ------cCGGCGCCuAGCuUGCGGCCu -3'
miRNA:   3'- cuguaaaGUCGCGGcUUG-ACGCCGGu -5'
20415 3' -54.6 NC_004688.1 + 74695 0.67 0.841604
Target:  5'- aGGCGggugccgUCGGCGCCGAuGCcgauauCGGCCAg -3'
miRNA:   3'- -CUGUaa-----AGUCGCGGCU-UGac----GCCGGU- -5'
20415 3' -54.6 NC_004688.1 + 49153 0.68 0.80619
Target:  5'- aGugAUgagguGCGCCGcGCcGCGGCCGa -3'
miRNA:   3'- -CugUAaagu-CGCGGCuUGaCGCCGGU- -5'
20415 3' -54.6 NC_004688.1 + 51681 0.68 0.768041
Target:  5'- cGCggUUCAGCGCCGAcACcgGCGGaCGu -3'
miRNA:   3'- cUGuaAAGUCGCGGCU-UGa-CGCCgGU- -5'
20415 3' -54.6 NC_004688.1 + 51762 0.69 0.738014
Target:  5'- cGACGUUggCGGUGCUGGaugcggagaagGCUGCGGUUg -3'
miRNA:   3'- -CUGUAAa-GUCGCGGCU-----------UGACGCCGGu -5'
20415 3' -54.6 NC_004688.1 + 23176 0.69 0.727791
Target:  5'- ------cCAGCGCCGccuGCUggGCGGCCGg -3'
miRNA:   3'- cuguaaaGUCGCGGCu--UGA--CGCCGGU- -5'
20415 3' -54.6 NC_004688.1 + 11597 0.72 0.579814
Target:  5'- gGGCG----AGCGCCucaAACUGCGGCCAg -3'
miRNA:   3'- -CUGUaaagUCGCGGc--UUGACGCCGGU- -5'
20415 3' -54.6 NC_004688.1 + 26181 0.77 0.304632
Target:  5'- gGGCAUgcCGGUGCCGGGCUGCuGCCu -3'
miRNA:   3'- -CUGUAaaGUCGCGGCUUGACGcCGGu -5'
20415 3' -54.6 NC_004688.1 + 6441 1.09 0.002337
Target:  5'- cGACAUUUCAGCGCCGAACUGCGGCCAg -3'
miRNA:   3'- -CUGUAAAGUCGCGGCUUGACGCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.