miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20415 5' -59.9 NC_004688.1 + 6406 1.13 0.000554
Target:  5'- uGCCGAGGCGGUCCACCCCGAAGUCGCg -3'
miRNA:   3'- -CGGCUCCGCCAGGUGGGGCUUCAGCG- -5'
20415 5' -59.9 NC_004688.1 + 26308 0.76 0.200365
Target:  5'- cGCCGAGGCcG-CCGCCCUGggGcUGCc -3'
miRNA:   3'- -CGGCUCCGcCaGGUGGGGCuuCaGCG- -5'
20415 5' -59.9 NC_004688.1 + 94313 0.75 0.237111
Target:  5'- cGCC-AGGaacuCGGUagUCACCCCGAAGUCGUc -3'
miRNA:   3'- -CGGcUCC----GCCA--GGUGGGGCUUCAGCG- -5'
20415 5' -59.9 NC_004688.1 + 26243 0.75 0.242799
Target:  5'- cCCGcGGCGGUuugacCCGCCUCGAGGcCGCc -3'
miRNA:   3'- cGGCuCCGCCA-----GGUGGGGCUUCaGCG- -5'
20415 5' -59.9 NC_004688.1 + 72907 0.75 0.248601
Target:  5'- cGCUGAGGCcGcCCcacACCCCGAGG-CGCa -3'
miRNA:   3'- -CGGCUCCGcCaGG---UGGGGCUUCaGCG- -5'
20415 5' -59.9 NC_004688.1 + 91053 0.74 0.292453
Target:  5'- cGCCGAGGUGaUCCACCuugccgguCUGGAcGUCGCc -3'
miRNA:   3'- -CGGCUCCGCcAGGUGG--------GGCUU-CAGCG- -5'
20415 5' -59.9 NC_004688.1 + 98116 0.71 0.414477
Target:  5'- uUCG-GGCGGgcgUCgCACCCCGGAuUCGCa -3'
miRNA:   3'- cGGCuCCGCC---AG-GUGGGGCUUcAGCG- -5'
20415 5' -59.9 NC_004688.1 + 73900 0.71 0.414477
Target:  5'- cGCCGucGGCguugaauggGGUCCAgccCCCCGAGGggGCg -3'
miRNA:   3'- -CGGCu-CCG---------CCAGGU---GGGGCUUCagCG- -5'
20415 5' -59.9 NC_004688.1 + 41151 0.7 0.449515
Target:  5'- uGUCGAGGaCGGUCUcgaugauggcGCCgCCGAAuGUCGg -3'
miRNA:   3'- -CGGCUCC-GCCAGG----------UGG-GGCUU-CAGCg -5'
20415 5' -59.9 NC_004688.1 + 43594 0.7 0.476836
Target:  5'- uCCGAGGCGacauaCCGCCaCGAGGUCuGCu -3'
miRNA:   3'- cGGCUCCGCca---GGUGGgGCUUCAG-CG- -5'
20415 5' -59.9 NC_004688.1 + 38973 0.69 0.494558
Target:  5'- cGCCGGGGauaacgaCGGcCCcggcaACCCCGGAGgugaCGCu -3'
miRNA:   3'- -CGGCUCC-------GCCaGG-----UGGGGCUUCa---GCG- -5'
20415 5' -59.9 NC_004688.1 + 27451 0.69 0.4955
Target:  5'- gGCCGAGGC--UUC-CCUCGucGUCGCg -3'
miRNA:   3'- -CGGCUCCGccAGGuGGGGCuuCAGCG- -5'
20415 5' -59.9 NC_004688.1 + 86292 0.69 0.524091
Target:  5'- uGCgGAauGGgGGUCUucauucucuACCCCGAGGauuUCGCa -3'
miRNA:   3'- -CGgCU--CCgCCAGG---------UGGGGCUUC---AGCG- -5'
20415 5' -59.9 NC_004688.1 + 7638 0.69 0.524091
Target:  5'- cGCCGucGGcCGGUUCGCCUCG---UCGCg -3'
miRNA:   3'- -CGGCu-CC-GCCAGGUGGGGCuucAGCG- -5'
20415 5' -59.9 NC_004688.1 + 77706 0.69 0.542522
Target:  5'- cGCCacaguGGGCGGUguucaucCCGCCCCagcgcuuGUCGCa -3'
miRNA:   3'- -CGGc----UCCGCCA-------GGUGGGGcuu----CAGCG- -5'
20415 5' -59.9 NC_004688.1 + 20401 0.68 0.553291
Target:  5'- cGCCGAGGUGGUagAagCCGAGGcCGUu -3'
miRNA:   3'- -CGGCUCCGCCAggUggGGCUUCaGCG- -5'
20415 5' -59.9 NC_004688.1 + 9832 0.68 0.573026
Target:  5'- uGCCGuAGcuacguccGCGGgcCCGCCCgGAuGUCGCu -3'
miRNA:   3'- -CGGC-UC--------CGCCa-GGUGGGgCUuCAGCG- -5'
20415 5' -59.9 NC_004688.1 + 58804 0.68 0.573026
Target:  5'- cGCCGGGGCcaucgCCACCaCCGcGGUcuccCGCa -3'
miRNA:   3'- -CGGCUCCGcca--GGUGG-GGCuUCA----GCG- -5'
20415 5' -59.9 NC_004688.1 + 80876 0.68 0.573026
Target:  5'- cCCGGcGGuCGGUagaCGCCCCGGcgauacGUCGCu -3'
miRNA:   3'- cGGCU-CC-GCCAg--GUGGGGCUu-----CAGCG- -5'
20415 5' -59.9 NC_004688.1 + 92952 0.68 0.573026
Target:  5'- gGCCGcGGCGauUCUGCUUCGGAGUCGg -3'
miRNA:   3'- -CGGCuCCGCc-AGGUGGGGCUUCAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.