Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20415 | 5' | -59.9 | NC_004688.1 | + | 38973 | 0.69 | 0.494558 |
Target: 5'- cGCCGGGGauaacgaCGGcCCcggcaACCCCGGAGgugaCGCu -3' miRNA: 3'- -CGGCUCC-------GCCaGG-----UGGGGCUUCa---GCG- -5' |
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20415 | 5' | -59.9 | NC_004688.1 | + | 39986 | 0.66 | 0.67304 |
Target: 5'- uGuuGuGGC-GUCCGCCgCCGcAGUgGCg -3' miRNA: 3'- -CggCuCCGcCAGGUGG-GGCuUCAgCG- -5' |
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20415 | 5' | -59.9 | NC_004688.1 | + | 41151 | 0.7 | 0.449515 |
Target: 5'- uGUCGAGGaCGGUCUcgaugauggcGCCgCCGAAuGUCGg -3' miRNA: 3'- -CGGCUCC-GCCAGG----------UGG-GGCUU-CAGCg -5' |
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20415 | 5' | -59.9 | NC_004688.1 | + | 43137 | 0.67 | 0.663055 |
Target: 5'- uGUCGAGGCGGUuauuggugggaUCGCCaUCGuuGUgGCa -3' miRNA: 3'- -CGGCUCCGCCA-----------GGUGG-GGCuuCAgCG- -5' |
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20415 | 5' | -59.9 | NC_004688.1 | + | 43538 | 0.68 | 0.601914 |
Target: 5'- cGCCGAGGgGGU-CGCCgCGAcgGGcuucccguuaaucUCGCg -3' miRNA: 3'- -CGGCUCCgCCAgGUGGgGCU--UC-------------AGCG- -5' |
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20415 | 5' | -59.9 | NC_004688.1 | + | 43594 | 0.7 | 0.476836 |
Target: 5'- uCCGAGGCGacauaCCGCCaCGAGGUCuGCu -3' miRNA: 3'- cGGCUCCGCca---GGUGGgGCUUCAG-CG- -5' |
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20415 | 5' | -59.9 | NC_004688.1 | + | 43881 | 0.66 | 0.692905 |
Target: 5'- aGCuCGcGcGCGaGaUCCGCCCCGAAGcCGg -3' miRNA: 3'- -CG-GCuC-CGC-C-AGGUGGGGCUUCaGCg -5' |
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20415 | 5' | -59.9 | NC_004688.1 | + | 58804 | 0.68 | 0.573026 |
Target: 5'- cGCCGGGGCcaucgCCACCaCCGcGGUcuccCGCa -3' miRNA: 3'- -CGGCUCCGcca--GGUGG-GGCuUCA----GCG- -5' |
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20415 | 5' | -59.9 | NC_004688.1 | + | 72907 | 0.75 | 0.248601 |
Target: 5'- cGCUGAGGCcGcCCcacACCCCGAGG-CGCa -3' miRNA: 3'- -CGGCUCCGcCaGG---UGGGGCUUCaGCG- -5' |
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20415 | 5' | -59.9 | NC_004688.1 | + | 73355 | 0.67 | 0.643021 |
Target: 5'- uGCCGAGGCGcucggCCaaguggacgACCgUGAAGcCGCg -3' miRNA: 3'- -CGGCUCCGCca---GG---------UGGgGCUUCaGCG- -5' |
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20415 | 5' | -59.9 | NC_004688.1 | + | 73900 | 0.71 | 0.414477 |
Target: 5'- cGCCGucGGCguugaauggGGUCCAgccCCCCGAGGggGCg -3' miRNA: 3'- -CGGCu-CCG---------CCAGGU---GGGGCUUCagCG- -5' |
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20415 | 5' | -59.9 | NC_004688.1 | + | 77706 | 0.69 | 0.542522 |
Target: 5'- cGCCacaguGGGCGGUguucaucCCGCCCCagcgcuuGUCGCa -3' miRNA: 3'- -CGGc----UCCGCCA-------GGUGGGGcuu----CAGCG- -5' |
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20415 | 5' | -59.9 | NC_004688.1 | + | 80876 | 0.68 | 0.573026 |
Target: 5'- cCCGGcGGuCGGUagaCGCCCCGGcgauacGUCGCu -3' miRNA: 3'- cGGCU-CC-GCCAg--GUGGGGCUu-----CAGCG- -5' |
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20415 | 5' | -59.9 | NC_004688.1 | + | 80937 | 0.68 | 0.582957 |
Target: 5'- cGuuGAGGCGucgugccguauUUCACCCCGGAGU-GCc -3' miRNA: 3'- -CggCUCCGCc----------AGGUGGGGCUUCAgCG- -5' |
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20415 | 5' | -59.9 | NC_004688.1 | + | 86292 | 0.69 | 0.524091 |
Target: 5'- uGCgGAauGGgGGUCUucauucucuACCCCGAGGauuUCGCa -3' miRNA: 3'- -CGgCU--CCgCCAGG---------UGGGGCUUC---AGCG- -5' |
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20415 | 5' | -59.9 | NC_004688.1 | + | 91053 | 0.74 | 0.292453 |
Target: 5'- cGCCGAGGUGaUCCACCuugccgguCUGGAcGUCGCc -3' miRNA: 3'- -CGGCUCCGCcAGGUGG--------GGCUU-CAGCG- -5' |
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20415 | 5' | -59.9 | NC_004688.1 | + | 91493 | 0.67 | 0.643021 |
Target: 5'- uCCGAGGCGGgu-GCCgCGGAuGUCGa -3' miRNA: 3'- cGGCUCCGCCaggUGGgGCUU-CAGCg -5' |
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20415 | 5' | -59.9 | NC_004688.1 | + | 92952 | 0.68 | 0.573026 |
Target: 5'- gGCCGcGGCGauUCUGCUUCGGAGUCGg -3' miRNA: 3'- -CGGCuCCGCc-AGGUGGGGCUUCAGCg -5' |
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20415 | 5' | -59.9 | NC_004688.1 | + | 94313 | 0.75 | 0.237111 |
Target: 5'- cGCC-AGGaacuCGGUagUCACCCCGAAGUCGUc -3' miRNA: 3'- -CGGcUCC----GCCA--GGUGGGGCUUCAGCG- -5' |
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20415 | 5' | -59.9 | NC_004688.1 | + | 94960 | 0.68 | 0.601914 |
Target: 5'- gGCCGGGGCauaaagaaugugGGUaCCcucgugGCCCUcuucaaggucgcaGAAGUCGCa -3' miRNA: 3'- -CGGCUCCG------------CCA-GG------UGGGG-------------CUUCAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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