miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20416 3' -58.4 NC_004688.1 + 54399 0.66 0.743298
Target:  5'- --cCCGGCCGguCUCGGCGa------ -3'
miRNA:   3'- guuGGCCGGCguGAGCCGCccaaucu -5'
20416 3' -58.4 NC_004688.1 + 52804 0.66 0.733511
Target:  5'- -uGCUGGCCGCGCUCGccccaucggauGCGG---AGAu -3'
miRNA:   3'- guUGGCCGGCGUGAGC-----------CGCCcaaUCU- -5'
20416 3' -58.4 NC_004688.1 + 29355 0.66 0.723634
Target:  5'- uGGCCgGGCCGaucgccacccCGCgCGGCGGGaaUUGGAc -3'
miRNA:   3'- gUUGG-CCGGC----------GUGaGCCGCCC--AAUCU- -5'
20416 3' -58.4 NC_004688.1 + 103236 0.67 0.693567
Target:  5'- uCAGCgaaUGGCCGCugUCGGuCGaGGUcaAGAu -3'
miRNA:   3'- -GUUG---GCCGGCGugAGCC-GC-CCAa-UCU- -5'
20416 3' -58.4 NC_004688.1 + 65906 0.67 0.683429
Target:  5'- aAACCGGCaCcCACUcCGGUGGGUc--- -3'
miRNA:   3'- gUUGGCCG-GcGUGA-GCCGCCCAaucu -5'
20416 3' -58.4 NC_004688.1 + 93262 0.67 0.683429
Target:  5'- gCAGCCGGCCGUcuuCUUugGuGCGGGUg--- -3'
miRNA:   3'- -GUUGGCCGGCGu--GAG--C-CGCCCAaucu -5'
20416 3' -58.4 NC_004688.1 + 34350 0.67 0.663034
Target:  5'- cCGGCUGGCCGguCUCcGcGCGGGa---- -3'
miRNA:   3'- -GUUGGCCGGCguGAG-C-CGCCCaaucu -5'
20416 3' -58.4 NC_004688.1 + 55806 0.67 0.652795
Target:  5'- gCGACCGGCgGCuagCGGCgcucgacacccgGGGUUGGc -3'
miRNA:   3'- -GUUGGCCGgCGugaGCCG------------CCCAAUCu -5'
20416 3' -58.4 NC_004688.1 + 74802 0.68 0.642539
Target:  5'- --cCCaGCCGauCugUCGGCGGGUgGGGg -3'
miRNA:   3'- guuGGcCGGC--GugAGCCGCCCAaUCU- -5'
20416 3' -58.4 NC_004688.1 + 78696 0.69 0.560848
Target:  5'- ---gUGGCCGCAUcgaUCGGCGGGa---- -3'
miRNA:   3'- guugGCCGGCGUG---AGCCGCCCaaucu -5'
20416 3' -58.4 NC_004688.1 + 67593 0.7 0.491808
Target:  5'- --gUCGGCgGCGgUCGGCGGGcugAGGu -3'
miRNA:   3'- guuGGCCGgCGUgAGCCGCCCaa-UCU- -5'
20416 3' -58.4 NC_004688.1 + 31662 0.71 0.435912
Target:  5'- gAACUGGCCGCGCagGGCGGa----- -3'
miRNA:   3'- gUUGGCCGGCGUGagCCGCCcaaucu -5'
20416 3' -58.4 NC_004688.1 + 63922 0.73 0.367449
Target:  5'- uGGCCGGggaCCGC-CUCGGCGGGg---- -3'
miRNA:   3'- gUUGGCC---GGCGuGAGCCGCCCaaucu -5'
20416 3' -58.4 NC_004688.1 + 5129 0.75 0.28605
Target:  5'- --cCCGGcCCGCAUUgCGGCGGGUgguGAa -3'
miRNA:   3'- guuGGCC-GGCGUGA-GCCGCCCAau-CU- -5'
20416 3' -58.4 NC_004688.1 + 8517 1.08 0.001419
Target:  5'- uCAACCGGCCGCACUCGGCGGGUUAGAg -3'
miRNA:   3'- -GUUGGCCGGCGUGAGCCGCCCAAUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.