miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20417 3' -56.7 NC_004688.1 + 22506 0.66 0.849132
Target:  5'- gUCGggUGGAUCUCUuuauCGAGggCCUUg -3'
miRNA:   3'- aGGCuuGCCUGGAGGc---GCUCaaGGAG- -5'
20417 3' -56.7 NC_004688.1 + 74612 0.66 0.849132
Target:  5'- gCCG-AUGGACUUCCGCcagggcuGUUCUUUg -3'
miRNA:   3'- aGGCuUGCCUGGAGGCGcu-----CAAGGAG- -5'
20417 3' -56.7 NC_004688.1 + 51607 0.66 0.841032
Target:  5'- -gUGAAUGuGAUUUCCGCGAcgGUUCgCUCg -3'
miRNA:   3'- agGCUUGC-CUGGAGGCGCU--CAAG-GAG- -5'
20417 3' -56.7 NC_004688.1 + 54399 0.66 0.832739
Target:  5'- cCCGGcCGG-UCUCgGCGAucUCCUCg -3'
miRNA:   3'- aGGCUuGCCuGGAGgCGCUcaAGGAG- -5'
20417 3' -56.7 NC_004688.1 + 12103 0.66 0.832739
Target:  5'- gCCG-GCGGAUgacgguggCUUCGCGGGUUugagCCUCg -3'
miRNA:   3'- aGGCuUGCCUG--------GAGGCGCUCAA----GGAG- -5'
20417 3' -56.7 NC_004688.1 + 13523 0.66 0.824261
Target:  5'- cUCCGGAUaGGCCUgCGCGAcGUcguugacggCCUCg -3'
miRNA:   3'- -AGGCUUGcCUGGAgGCGCU-CAa--------GGAG- -5'
20417 3' -56.7 NC_004688.1 + 54204 0.66 0.824261
Target:  5'- cCCGGugGGucuugguguCCUUCuCGAcGUUCCUCa -3'
miRNA:   3'- aGGCUugCCu--------GGAGGcGCU-CAAGGAG- -5'
20417 3' -56.7 NC_004688.1 + 95550 0.67 0.797794
Target:  5'- --gGAGCGG-CCUCCGaagcuugggcUGGGUUCCUa -3'
miRNA:   3'- aggCUUGCCuGGAGGC----------GCUCAAGGAg -5'
20417 3' -56.7 NC_004688.1 + 87866 0.67 0.796887
Target:  5'- gCCGaAGCGccuugauGACCccaguguucUCUGCGAGUUCUUCg -3'
miRNA:   3'- aGGC-UUGC-------CUGG---------AGGCGCUCAAGGAG- -5'
20417 3' -56.7 NC_004688.1 + 63722 0.69 0.680738
Target:  5'- gUgGAGCGGGCCUCCGCcAGguaUUCg -3'
miRNA:   3'- aGgCUUGCCUGGAGGCGcUCaagGAG- -5'
20417 3' -56.7 NC_004688.1 + 9120 1.1 0.001754
Target:  5'- gUCCGAACGGACCUCCGCGAGUUCCUCu -3'
miRNA:   3'- -AGGCUUGCCUGGAGGCGCUCAAGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.