miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20418 5' -57.9 NC_004688.1 + 87738 0.65 0.785887
Target:  5'- uUgGUGCCCCUCauuguuccgaagugGggGCGcgucugGCCGAc -3'
miRNA:   3'- cAgCGCGGGGAG--------------CuuCGCuua---CGGCU- -5'
20418 5' -57.9 NC_004688.1 + 63937 0.66 0.779375
Target:  5'- aUCGCGCCCCcacacuggcCGGggaccgccucGGCGGggcGUGCCGu -3'
miRNA:   3'- cAGCGCGGGGa--------GCU----------UCGCU---UACGGCu -5'
20418 5' -57.9 NC_004688.1 + 90960 0.66 0.779375
Target:  5'- gGUCGCGCUCCacUGcGGCGuacaggGCCGGg -3'
miRNA:   3'- -CAGCGCGGGGa-GCuUCGCuua---CGGCU- -5'
20418 5' -57.9 NC_004688.1 + 81975 0.66 0.779375
Target:  5'- uUCG-GCUCCUCG-GGCGuggcGCCGAg -3'
miRNA:   3'- cAGCgCGGGGAGCuUCGCuua-CGGCU- -5'
20418 5' -57.9 NC_004688.1 + 83287 0.66 0.750765
Target:  5'- -cCG-GCaCCCUCGAAuGCGGugcggauUGCCGAc -3'
miRNA:   3'- caGCgCG-GGGAGCUU-CGCUu------ACGGCU- -5'
20418 5' -57.9 NC_004688.1 + 98507 0.66 0.741003
Target:  5'- --gGCGUCCgUCGAGGCGGGaaaGCCu- -3'
miRNA:   3'- cagCGCGGGgAGCUUCGCUUa--CGGcu -5'
20418 5' -57.9 NC_004688.1 + 28498 0.67 0.731146
Target:  5'- --aGCGCCaCCUgGccaucGGCGAGgggGCCGAa -3'
miRNA:   3'- cagCGCGG-GGAgCu----UCGCUUa--CGGCU- -5'
20418 5' -57.9 NC_004688.1 + 22938 0.67 0.721201
Target:  5'- -gCGCGCCCCgaggggaCGAacggcagaucGGUGAGcauguUGCCGAu -3'
miRNA:   3'- caGCGCGGGGa------GCU----------UCGCUU-----ACGGCU- -5'
20418 5' -57.9 NC_004688.1 + 27074 0.67 0.701087
Target:  5'- cUCGCGCCCUuguuaUCGAGGUGAuugaauagaggGUGCa-- -3'
miRNA:   3'- cAGCGCGGGG-----AGCUUCGCU-----------UACGgcu -5'
20418 5' -57.9 NC_004688.1 + 24216 0.67 0.701087
Target:  5'- cGUCGCGCCCg-UGggGaccguUGCCGGu -3'
miRNA:   3'- -CAGCGCGGGgaGCuuCgcuu-ACGGCU- -5'
20418 5' -57.9 NC_004688.1 + 13923 0.67 0.680738
Target:  5'- uGUCGCGCUCCguaUCGuuGGCGc-UGCCGc -3'
miRNA:   3'- -CAGCGCGGGG---AGCu-UCGCuuACGGCu -5'
20418 5' -57.9 NC_004688.1 + 107215 0.68 0.649931
Target:  5'- aUCuCGUCCCUCGAugAGCGAGaGuuGAu -3'
miRNA:   3'- cAGcGCGGGGAGCU--UCGCUUaCggCU- -5'
20418 5' -57.9 NC_004688.1 + 28704 0.68 0.649931
Target:  5'- --aGCGCCCCUUGAggagGGCGuacauguUGCCu- -3'
miRNA:   3'- cagCGCGGGGAGCU----UCGCuu-----ACGGcu -5'
20418 5' -57.9 NC_004688.1 + 8840 0.68 0.618994
Target:  5'- gGUCGCGUUUgUCGAGGCGg--GCCa- -3'
miRNA:   3'- -CAGCGCGGGgAGCUUCGCuuaCGGcu -5'
20418 5' -57.9 NC_004688.1 + 20833 0.7 0.537467
Target:  5'- aGUC-CGCaCCCUCGcggugccacaGAGCGGGcuUGCCGAc -3'
miRNA:   3'- -CAGcGCG-GGGAGC----------UUCGCUU--ACGGCU- -5'
20418 5' -57.9 NC_004688.1 + 61667 0.7 0.50778
Target:  5'- -gCGCGCCaCCgauaaCGAAgGCGAggGCCGGa -3'
miRNA:   3'- caGCGCGG-GGa----GCUU-CGCUuaCGGCU- -5'
20418 5' -57.9 NC_004688.1 + 75182 0.72 0.432431
Target:  5'- uGUCGCGgaUCUCGuugcuGCGGAUGCCGGu -3'
miRNA:   3'- -CAGCGCggGGAGCuu---CGCUUACGGCU- -5'
20418 5' -57.9 NC_004688.1 + 56698 0.73 0.388779
Target:  5'- aUCGCGCauaCCgauucUGAAGaCGGAUGCCGAg -3'
miRNA:   3'- cAGCGCGg--GGa----GCUUC-GCUUACGGCU- -5'
20418 5' -57.9 NC_004688.1 + 17319 0.84 0.068643
Target:  5'- -gUGCGCgCCCUCGAuGCGGAUGCCGGg -3'
miRNA:   3'- caGCGCG-GGGAGCUuCGCUUACGGCU- -5'
20418 5' -57.9 NC_004688.1 + 9301 1.08 0.001613
Target:  5'- gGUCGCGCCCCUCGAAGCGAAUGCCGAc -3'
miRNA:   3'- -CAGCGCGGGGAGCUUCGCUUACGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.