miRNA display CGI


Results 1 - 20 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20419 3' -51.4 NC_004688.1 + 9860 1.13 0.004006
Target:  5'- gGGCAUGAGAUCCCGAAAAACCCGCGGc -3'
miRNA:   3'- -CCGUACUCUAGGGCUUUUUGGGCGCC- -5'
20419 3' -51.4 NC_004688.1 + 14955 0.8 0.384707
Target:  5'- gGGCAaaGAGAUCCUGAGAGAUuuGUGGc -3'
miRNA:   3'- -CCGUa-CUCUAGGGCUUUUUGggCGCC- -5'
20419 3' -51.4 NC_004688.1 + 61185 0.78 0.506894
Target:  5'- cGGCGagGAGAUCCgGAGGGugUCGUGGu -3'
miRNA:   3'- -CCGUa-CUCUAGGgCUUUUugGGCGCC- -5'
20419 3' -51.4 NC_004688.1 + 41687 0.74 0.695557
Target:  5'- uGGuCAcGAGG-CCCuuGGAGCCCGCGGa -3'
miRNA:   3'- -CC-GUaCUCUaGGGcuUUUUGGGCGCC- -5'
20419 3' -51.4 NC_004688.1 + 62965 0.74 0.726634
Target:  5'- cGGCGgcgGAGAUCaCCGcgu-GCuCCGCGGu -3'
miRNA:   3'- -CCGUa--CUCUAG-GGCuuuuUG-GGCGCC- -5'
20419 3' -51.4 NC_004688.1 + 101279 0.73 0.736831
Target:  5'- gGGCAagaaUGAGGUCCUGAcguugcAGACgCUGCGGu -3'
miRNA:   3'- -CCGU----ACUCUAGGGCUu-----UUUG-GGCGCC- -5'
20419 3' -51.4 NC_004688.1 + 26044 0.73 0.74693
Target:  5'- gGGCAcG-GcUCCgGGGAGGCCCGUGGg -3'
miRNA:   3'- -CCGUaCuCuAGGgCUUUUUGGGCGCC- -5'
20419 3' -51.4 NC_004688.1 + 59250 0.73 0.775566
Target:  5'- cGGCAUGAG--CCCGAccucggcauggugGAGACCgaGCGGc -3'
miRNA:   3'- -CCGUACUCuaGGGCU-------------UUUUGGg-CGCC- -5'
20419 3' -51.4 NC_004688.1 + 90814 0.72 0.786137
Target:  5'- gGGCGcgcUGcugccaCCGGGAGACCCGCGGa -3'
miRNA:   3'- -CCGU---ACucuag-GGCUUUUUGGGCGCC- -5'
20419 3' -51.4 NC_004688.1 + 98865 0.71 0.831718
Target:  5'- cGCGUGAaguggcuucGAUCCUGcGAAgcggccacgGCCCGCGGc -3'
miRNA:   3'- cCGUACU---------CUAGGGCuUUU---------UGGGCGCC- -5'
20419 3' -51.4 NC_004688.1 + 10808 0.71 0.831718
Target:  5'- uGGCGUaguccgcggcGAGAUCCCGGAagacGAACUCGuCGa -3'
miRNA:   3'- -CCGUA----------CUCUAGGGCUU----UUUGGGC-GCc -5'
20419 3' -51.4 NC_004688.1 + 73602 0.71 0.831718
Target:  5'- aGgGUGGGAUCgaugCGggGccgGGCCCGCGGg -3'
miRNA:   3'- cCgUACUCUAGg---GCuuU---UUGGGCGCC- -5'
20419 3' -51.4 NC_004688.1 + 27533 0.71 0.848644
Target:  5'- cGGCcgGGGAUCagGAAGuugaCCGCGGa -3'
miRNA:   3'- -CCGuaCUCUAGggCUUUuug-GGCGCC- -5'
20419 3' -51.4 NC_004688.1 + 53175 0.71 0.872427
Target:  5'- cGGCgaGUGAuGGUCCagcgCGaAGAAGCCCGCGa -3'
miRNA:   3'- -CCG--UACU-CUAGG----GC-UUUUUGGGCGCc -5'
20419 3' -51.4 NC_004688.1 + 110687 0.7 0.88642
Target:  5'- uGGCAUGGcGAUUgCGAccgccugAGAGCCaCGUGGa -3'
miRNA:   3'- -CCGUACU-CUAGgGCU-------UUUUGG-GCGCC- -5'
20419 3' -51.4 NC_004688.1 + 85470 0.7 0.892745
Target:  5'- uGGCGUGAaagCCCGAAuuacaguauccACCCGgGGa -3'
miRNA:   3'- -CCGUACUcuaGGGCUUuu---------UGGGCgCC- -5'
20419 3' -51.4 NC_004688.1 + 46519 0.7 0.893436
Target:  5'- uGGCGUGc-GUCCCGGucGACgguaagccgaucgCCGCGGg -3'
miRNA:   3'- -CCGUACucUAGGGCUuuUUG-------------GGCGCC- -5'
20419 3' -51.4 NC_004688.1 + 96298 0.7 0.894124
Target:  5'- aGGCGaaAGGUCCCcggcc-CCCGCGGg -3'
miRNA:   3'- -CCGUacUCUAGGGcuuuuuGGGCGCC- -5'
20419 3' -51.4 NC_004688.1 + 673 0.7 0.907362
Target:  5'- -aCAUGAGccgCCCGGAGGGCgCGCaGGg -3'
miRNA:   3'- ccGUACUCua-GGGCUUUUUGgGCG-CC- -5'
20419 3' -51.4 NC_004688.1 + 68194 0.7 0.907362
Target:  5'- cGGCG-GAGAugUCCUGAcaggGGAAUCCGCcGGu -3'
miRNA:   3'- -CCGUaCUCU--AGGGCU----UUUUGGGCG-CC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.