miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20419 5' -65 NC_004688.1 + 70142 0.66 0.412701
Target:  5'- aGUCCGUGGGgaaugucaCCCGCCCgcggGGAUaGUCa-- -3'
miRNA:   3'- -CAGGCGCCC--------GGGCGGG----CCUA-CAGcga -5'
20419 5' -65 NC_004688.1 + 5347 0.66 0.404392
Target:  5'- gGUCCGCGGGUCCa--CGc-UGUCGCUg -3'
miRNA:   3'- -CAGGCGCCCGGGcggGCcuACAGCGA- -5'
20419 5' -65 NC_004688.1 + 73833 0.67 0.396191
Target:  5'- -aCCGgGGGCUaauuCCCGGAUGUUGg- -3'
miRNA:   3'- caGGCgCCCGGgc--GGGCCUACAGCga -5'
20419 5' -65 NC_004688.1 + 94817 0.67 0.388096
Target:  5'- -cCCGCGuaucGCUCGCCCGGAg--CGCc -3'
miRNA:   3'- caGGCGCc---CGGGCGGGCCUacaGCGa -5'
20419 5' -65 NC_004688.1 + 43720 0.67 0.364475
Target:  5'- -cCCGCGGGCCaggggcgcaGCUgGGAugccuUGUUGCg -3'
miRNA:   3'- caGGCGCCCGGg--------CGGgCCU-----ACAGCGa -5'
20419 5' -65 NC_004688.1 + 30921 0.67 0.356826
Target:  5'- ---gGcCGGGCCCGCCCGGA--UCGa- -3'
miRNA:   3'- caggC-GCCCGGGCGGGCCUacAGCga -5'
20419 5' -65 NC_004688.1 + 12085 0.68 0.341867
Target:  5'- cUUCGCGGGUUugaGCCUcGGUGUCGCg -3'
miRNA:   3'- cAGGCGCCCGGg--CGGGcCUACAGCGa -5'
20419 5' -65 NC_004688.1 + 53653 0.68 0.337469
Target:  5'- -cCUGCGGGUCCGCCCaGGcuccggcauugacGUCGCc -3'
miRNA:   3'- caGGCGCCCGGGCGGG-CCua-----------CAGCGa -5'
20419 5' -65 NC_004688.1 + 87919 0.69 0.299749
Target:  5'- -aCCGCaGGCCCGCUCcagGGAUGcgaCGCg -3'
miRNA:   3'- caGGCGcCCGGGCGGG---CCUACa--GCGa -5'
20419 5' -65 NC_004688.1 + 61547 0.69 0.28663
Target:  5'- -aCCGCGGuacGCCCGCaUCGGGUGcUGCa -3'
miRNA:   3'- caGGCGCC---CGGGCG-GGCCUACaGCGa -5'
20419 5' -65 NC_004688.1 + 27546 0.71 0.222491
Target:  5'- gGUCCaGCGGGCCCGgCCGGGgaucaggaaguUGacCGCg -3'
miRNA:   3'- -CAGG-CGCCCGGGCgGGCCU-----------ACa-GCGa -5'
20419 5' -65 NC_004688.1 + 9821 1.06 0.000521
Target:  5'- cGUCCGCGGGCCCGCCCGGAUGUCGCUc -3'
miRNA:   3'- -CAGGCGCCCGGGCGGGCCUACAGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.