miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20420 3' -56.5 NC_004688.1 + 20484 0.66 0.86724
Target:  5'- gCGCaCGGCGCGcuu-GCucuGGGCGAUCa -3'
miRNA:   3'- gGCGaGCCGUGCuaguCG---CCUGCUAG- -5'
20420 3' -56.5 NC_004688.1 + 58701 0.66 0.86724
Target:  5'- aUGCUgGGUGCGcuauuccUCGGCGGAgGGUUu -3'
miRNA:   3'- gGCGAgCCGUGCu------AGUCGCCUgCUAG- -5'
20420 3' -56.5 NC_004688.1 + 46251 0.66 0.866489
Target:  5'- cUCGUucgacauUCGGgGCGAUaaguggCGGCaGGACGGUCu -3'
miRNA:   3'- -GGCG-------AGCCgUGCUA------GUCG-CCUGCUAG- -5'
20420 3' -56.5 NC_004688.1 + 14036 0.66 0.859628
Target:  5'- cCCGCcgagcaagacgaUCGGCACGcccuucucGUCGGCGGuuuCcAUCg -3'
miRNA:   3'- -GGCG------------AGCCGUGC--------UAGUCGCCu--GcUAG- -5'
20420 3' -56.5 NC_004688.1 + 93203 0.66 0.851807
Target:  5'- -gGCUCGGCgggcuugccACGAU-GGCGGACcuuGUCa -3'
miRNA:   3'- ggCGAGCCG---------UGCUAgUCGCCUGc--UAG- -5'
20420 3' -56.5 NC_004688.1 + 39187 0.66 0.843785
Target:  5'- aCCGC-CGGUuuGGUCGGCGG-CGc-- -3'
miRNA:   3'- -GGCGaGCCGugCUAGUCGCCuGCuag -5'
20420 3' -56.5 NC_004688.1 + 73348 0.66 0.843785
Target:  5'- gCGCUCGGC-Ca---AGUGGACGAc- -3'
miRNA:   3'- gGCGAGCCGuGcuagUCGCCUGCUag -5'
20420 3' -56.5 NC_004688.1 + 104154 0.66 0.843785
Target:  5'- -gGCUCacgcGCGCGGU-AGCGGACGcaAUCg -3'
miRNA:   3'- ggCGAGc---CGUGCUAgUCGCCUGC--UAG- -5'
20420 3' -56.5 NC_004688.1 + 52333 0.66 0.827163
Target:  5'- gCGCgggCGGCGCaGAuUCAuCGGAgCGGUCg -3'
miRNA:   3'- gGCGa--GCCGUG-CU-AGUcGCCU-GCUAG- -5'
20420 3' -56.5 NC_004688.1 + 102912 0.67 0.818579
Target:  5'- aUCGCg-GGCGCGAcuggauaAGCGGGCGGc- -3'
miRNA:   3'- -GGCGagCCGUGCUag-----UCGCCUGCUag -5'
20420 3' -56.5 NC_004688.1 + 4970 0.67 0.809823
Target:  5'- gCGUUCGuaGCGaAUCgGGUGGGCGAUg -3'
miRNA:   3'- gGCGAGCcgUGC-UAG-UCGCCUGCUAg -5'
20420 3' -56.5 NC_004688.1 + 77233 0.67 0.786315
Target:  5'- aCGCUCcggcuucagcucgugGGCGCGGUau-CGGACGAUg -3'
miRNA:   3'- gGCGAG---------------CCGUGCUAgucGCCUGCUAg -5'
20420 3' -56.5 NC_004688.1 + 96715 0.67 0.773254
Target:  5'- aCGcCUCGGcCGCGAUaggcaccccCGGCaGGGCGAUg -3'
miRNA:   3'- gGC-GAGCC-GUGCUA---------GUCG-CCUGCUAg -5'
20420 3' -56.5 NC_004688.1 + 31033 0.68 0.767578
Target:  5'- cCCGCcgaGGCugGcgagguugccaggucGUCGGCGuuGGCGAUCa -3'
miRNA:   3'- -GGCGag-CCGugC---------------UAGUCGC--CUGCUAG- -5'
20420 3' -56.5 NC_004688.1 + 19556 0.68 0.763769
Target:  5'- gCCGCUcaacguuuaagCGGCgACGAUCcucauGUGGACG-UCg -3'
miRNA:   3'- -GGCGA-----------GCCG-UGCUAGu----CGCCUGCuAG- -5'
20420 3' -56.5 NC_004688.1 + 2405 0.68 0.762814
Target:  5'- gCCaCUCGGCgcuucucucuGCGAUCGGCGGGucuucguagauuuCGAUg -3'
miRNA:   3'- -GGcGAGCCG----------UGCUAGUCGCCU-------------GCUAg -5'
20420 3' -56.5 NC_004688.1 + 46114 0.68 0.744455
Target:  5'- --aCUCGGC-CGuuGUCgAGUGGACGAUCc -3'
miRNA:   3'- ggcGAGCCGuGC--UAG-UCGCCUGCUAG- -5'
20420 3' -56.5 NC_004688.1 + 104867 0.68 0.724743
Target:  5'- aCCGCgCGGCGaugaGAUCu-UGGAUGAUCu -3'
miRNA:   3'- -GGCGaGCCGUg---CUAGucGCCUGCUAG- -5'
20420 3' -56.5 NC_004688.1 + 105395 0.69 0.718763
Target:  5'- aCCGaugaugaccauugCGGCAagGGUCGGCGGACcGUCa -3'
miRNA:   3'- -GGCga-----------GCCGUg-CUAGUCGCCUGcUAG- -5'
20420 3' -56.5 NC_004688.1 + 557 0.69 0.694592
Target:  5'- gCGC-CGGCACGGauggCAGauGACGAUg -3'
miRNA:   3'- gGCGaGCCGUGCUa---GUCgcCUGCUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.