Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20420 | 3' | -56.5 | NC_004688.1 | + | 20484 | 0.66 | 0.86724 |
Target: 5'- gCGCaCGGCGCGcuu-GCucuGGGCGAUCa -3' miRNA: 3'- gGCGaGCCGUGCuaguCG---CCUGCUAG- -5' |
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20420 | 3' | -56.5 | NC_004688.1 | + | 557 | 0.69 | 0.694592 |
Target: 5'- gCGC-CGGCACGGauggCAGauGACGAUg -3' miRNA: 3'- gGCGaGCCGUGCUa---GUCgcCUGCUAg -5' |
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20420 | 3' | -56.5 | NC_004688.1 | + | 105395 | 0.69 | 0.718763 |
Target: 5'- aCCGaugaugaccauugCGGCAagGGUCGGCGGACcGUCa -3' miRNA: 3'- -GGCga-----------GCCGUg-CUAGUCGCCUGcUAG- -5' |
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20420 | 3' | -56.5 | NC_004688.1 | + | 104867 | 0.68 | 0.724743 |
Target: 5'- aCCGCgCGGCGaugaGAUCu-UGGAUGAUCu -3' miRNA: 3'- -GGCGaGCCGUg---CUAGucGCCUGCUAG- -5' |
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20420 | 3' | -56.5 | NC_004688.1 | + | 46114 | 0.68 | 0.744455 |
Target: 5'- --aCUCGGC-CGuuGUCgAGUGGACGAUCc -3' miRNA: 3'- ggcGAGCCGuGC--UAG-UCGCCUGCUAG- -5' |
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20420 | 3' | -56.5 | NC_004688.1 | + | 2405 | 0.68 | 0.762814 |
Target: 5'- gCCaCUCGGCgcuucucucuGCGAUCGGCGGGucuucguagauuuCGAUg -3' miRNA: 3'- -GGcGAGCCG----------UGCUAGUCGCCU-------------GCUAg -5' |
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20420 | 3' | -56.5 | NC_004688.1 | + | 19556 | 0.68 | 0.763769 |
Target: 5'- gCCGCUcaacguuuaagCGGCgACGAUCcucauGUGGACG-UCg -3' miRNA: 3'- -GGCGA-----------GCCG-UGCUAGu----CGCCUGCuAG- -5' |
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20420 | 3' | -56.5 | NC_004688.1 | + | 31033 | 0.68 | 0.767578 |
Target: 5'- cCCGCcgaGGCugGcgagguugccaggucGUCGGCGuuGGCGAUCa -3' miRNA: 3'- -GGCGag-CCGugC---------------UAGUCGC--CUGCUAG- -5' |
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20420 | 3' | -56.5 | NC_004688.1 | + | 96715 | 0.67 | 0.773254 |
Target: 5'- aCGcCUCGGcCGCGAUaggcaccccCGGCaGGGCGAUg -3' miRNA: 3'- gGC-GAGCC-GUGCUA---------GUCG-CCUGCUAg -5' |
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20420 | 3' | -56.5 | NC_004688.1 | + | 10137 | 0.69 | 0.684424 |
Target: 5'- gCGCUCuuGGCGCGGaacUCGGCGGucuCG-UCg -3' miRNA: 3'- gGCGAG--CCGUGCU---AGUCGCCu--GCuAG- -5' |
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20420 | 3' | -56.5 | NC_004688.1 | + | 33868 | 0.7 | 0.643401 |
Target: 5'- gCCGUUacCGGCACcacCAGCGGGCGcgCc -3' miRNA: 3'- -GGCGA--GCCGUGcuaGUCGCCUGCuaG- -5' |
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20420 | 3' | -56.5 | NC_004688.1 | + | 4871 | 0.7 | 0.622801 |
Target: 5'- gCGCUCGGaaagGAUCGGCGuauCGAUCg -3' miRNA: 3'- gGCGAGCCgug-CUAGUCGCcu-GCUAG- -5' |
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20420 | 3' | -56.5 | NC_004688.1 | + | 42525 | 0.79 | 0.223954 |
Target: 5'- gCC-CUCGGCGCGGUauuucgaCAGCGaGGCGAUCg -3' miRNA: 3'- -GGcGAGCCGUGCUA-------GUCGC-CUGCUAG- -5' |
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20420 | 3' | -56.5 | NC_004688.1 | + | 10662 | 0.75 | 0.367308 |
Target: 5'- gCGCUgGGgGCGGUCAGCGcGGCGuuGUCc -3' miRNA: 3'- gGCGAgCCgUGCUAGUCGC-CUGC--UAG- -5' |
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20420 | 3' | -56.5 | NC_004688.1 | + | 62975 | 0.74 | 0.400721 |
Target: 5'- gUC-CUCGGCGCGG-CGGCGGA-GAUCa -3' miRNA: 3'- -GGcGAGCCGUGCUaGUCGCCUgCUAG- -5' |
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20420 | 3' | -56.5 | NC_004688.1 | + | 56863 | 0.73 | 0.454309 |
Target: 5'- -aGCcCGGCGuCGAUCAGCGGcCGAa- -3' miRNA: 3'- ggCGaGCCGU-GCUAGUCGCCuGCUag -5' |
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20420 | 3' | -56.5 | NC_004688.1 | + | 67596 | 0.73 | 0.482519 |
Target: 5'- gUCG-UCGGCgGCGGUCGGCGGGCugaGGUCc -3' miRNA: 3'- -GGCgAGCCG-UGCUAGUCGCCUG---CUAG- -5' |
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20420 | 3' | -56.5 | NC_004688.1 | + | 17611 | 0.72 | 0.511549 |
Target: 5'- aUCG-UCGGCGCGAUCGGCGcggccGGCGcUCa -3' miRNA: 3'- -GGCgAGCCGUGCUAGUCGC-----CUGCuAG- -5' |
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20420 | 3' | -56.5 | NC_004688.1 | + | 28560 | 0.72 | 0.521387 |
Target: 5'- cCUGCUCGGUcUGAUCGGUGG-UGAUg -3' miRNA: 3'- -GGCGAGCCGuGCUAGUCGCCuGCUAg -5' |
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20420 | 3' | -56.5 | NC_004688.1 | + | 43951 | 0.72 | 0.541276 |
Target: 5'- gCGCaUCGGCAUGAcggCGGCGGGguaguUGAUCc -3' miRNA: 3'- gGCG-AGCCGUGCUa--GUCGCCU-----GCUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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