miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20420 3' -56.5 NC_004688.1 + 56863 0.73 0.454309
Target:  5'- -aGCcCGGCGuCGAUCAGCGGcCGAa- -3'
miRNA:   3'- ggCGaGCCGU-GCUAGUCGCCuGCUag -5'
20420 3' -56.5 NC_004688.1 + 58701 0.66 0.86724
Target:  5'- aUGCUgGGUGCGcuauuccUCGGCGGAgGGUUu -3'
miRNA:   3'- gGCGAgCCGUGCu------AGUCGCCUgCUAG- -5'
20420 3' -56.5 NC_004688.1 + 62975 0.74 0.400721
Target:  5'- gUC-CUCGGCGCGG-CGGCGGA-GAUCa -3'
miRNA:   3'- -GGcGAGCCGUGCUaGUCGCCUgCUAG- -5'
20420 3' -56.5 NC_004688.1 + 67596 0.73 0.482519
Target:  5'- gUCG-UCGGCgGCGGUCGGCGGGCugaGGUCc -3'
miRNA:   3'- -GGCgAGCCG-UGCUAGUCGCCUG---CUAG- -5'
20420 3' -56.5 NC_004688.1 + 73348 0.66 0.843785
Target:  5'- gCGCUCGGC-Ca---AGUGGACGAc- -3'
miRNA:   3'- gGCGAGCCGuGcuagUCGCCUGCUag -5'
20420 3' -56.5 NC_004688.1 + 77233 0.67 0.786315
Target:  5'- aCGCUCcggcuucagcucgugGGCGCGGUau-CGGACGAUg -3'
miRNA:   3'- gGCGAG---------------CCGUGCUAgucGCCUGCUAg -5'
20420 3' -56.5 NC_004688.1 + 93203 0.66 0.851807
Target:  5'- -gGCUCGGCgggcuugccACGAU-GGCGGACcuuGUCa -3'
miRNA:   3'- ggCGAGCCG---------UGCUAgUCGCCUGc--UAG- -5'
20420 3' -56.5 NC_004688.1 + 96715 0.67 0.773254
Target:  5'- aCGcCUCGGcCGCGAUaggcaccccCGGCaGGGCGAUg -3'
miRNA:   3'- gGC-GAGCC-GUGCUA---------GUCG-CCUGCUAg -5'
20420 3' -56.5 NC_004688.1 + 102912 0.67 0.818579
Target:  5'- aUCGCg-GGCGCGAcuggauaAGCGGGCGGc- -3'
miRNA:   3'- -GGCGagCCGUGCUag-----UCGCCUGCUag -5'
20420 3' -56.5 NC_004688.1 + 104154 0.66 0.843785
Target:  5'- -gGCUCacgcGCGCGGU-AGCGGACGcaAUCg -3'
miRNA:   3'- ggCGAGc---CGUGCUAgUCGCCUGC--UAG- -5'
20420 3' -56.5 NC_004688.1 + 104867 0.68 0.724743
Target:  5'- aCCGCgCGGCGaugaGAUCu-UGGAUGAUCu -3'
miRNA:   3'- -GGCGaGCCGUg---CUAGucGCCUGCUAG- -5'
20420 3' -56.5 NC_004688.1 + 105395 0.69 0.718763
Target:  5'- aCCGaugaugaccauugCGGCAagGGUCGGCGGACcGUCa -3'
miRNA:   3'- -GGCga-----------GCCGUg-CUAGUCGCCUGcUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.