miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20420 5' -55.3 NC_004688.1 + 73598 0.66 0.872363
Target:  5'- uGGGAUCGaUGcGGGGCcGGGCCCG-CGg -3'
miRNA:   3'- -UUCUAGC-GCaCCUUGcUCCGGGUuGC- -5'
20420 5' -55.3 NC_004688.1 + 86233 0.67 0.814476
Target:  5'- gGAGcUCGuCGaGGGGC-AGGCCCAGCa -3'
miRNA:   3'- -UUCuAGC-GCaCCUUGcUCCGGGUUGc -5'
20420 5' -55.3 NC_004688.1 + 48283 0.67 0.814476
Target:  5'- -cGAUUGCGccGGAcaACGGGGaCCUGACGu -3'
miRNA:   3'- uuCUAGCGCa-CCU--UGCUCC-GGGUUGC- -5'
20420 5' -55.3 NC_004688.1 + 79969 0.67 0.805438
Target:  5'- cGGAUCGCcauUGcGGugGAGGgCCAugGg -3'
miRNA:   3'- uUCUAGCGc--AC-CUugCUCCgGGUugC- -5'
20420 5' -55.3 NC_004688.1 + 17295 0.68 0.777364
Target:  5'- gGGGAUUGCGcGGAAC-AGGCagcgCAGCGg -3'
miRNA:   3'- -UUCUAGCGCaCCUUGcUCCGg---GUUGC- -5'
20420 5' -55.3 NC_004688.1 + 36840 0.7 0.665872
Target:  5'- -uGGUCGCGUucaGAuACGAGGCCgCGACa -3'
miRNA:   3'- uuCUAGCGCAc--CU-UGCUCCGG-GUUGc -5'
20420 5' -55.3 NC_004688.1 + 76379 0.72 0.53019
Target:  5'- gAGGGUCcagaGCG-GGAACggGAGGCCCAGCc -3'
miRNA:   3'- -UUCUAG----CGCaCCUUG--CUCCGGGUUGc -5'
20420 5' -55.3 NC_004688.1 + 11047 1.07 0.002998
Target:  5'- gAAGAUCGCGUGGAACGAGGCCCAACGa -3'
miRNA:   3'- -UUCUAGCGCACCUUGCUCCGGGUUGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.