miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20421 5' -54.8 NC_004688.1 + 7000 0.66 0.89586
Target:  5'- cGGGCGUGgGCuuGGCGUuGAUgGCGUg -3'
miRNA:   3'- -CCUGCGCgCGucUUGCAcCUAgUGCA- -5'
20421 5' -54.8 NC_004688.1 + 106357 0.67 0.882026
Target:  5'- cGGACGCGUcCAGAcaucCGUGcAUCAUGg -3'
miRNA:   3'- -CCUGCGCGcGUCUu---GCACcUAGUGCa -5'
20421 5' -54.8 NC_004688.1 + 10981 0.67 0.867271
Target:  5'- cGAgGUGUGCAc-ACGcUGGAUCGCGUc -3'
miRNA:   3'- cCUgCGCGCGUcuUGC-ACCUAGUGCA- -5'
20421 5' -54.8 NC_004688.1 + 35691 0.67 0.851637
Target:  5'- --cCGUGCGC-GAACGUGGGgguuccCACGg -3'
miRNA:   3'- ccuGCGCGCGuCUUGCACCUa-----GUGCa -5'
20421 5' -54.8 NC_004688.1 + 17852 0.67 0.851637
Target:  5'- aGGGCGCGUGCGGucucaGGGUCAUc- -3'
miRNA:   3'- -CCUGCGCGCGUCuugcaCCUAGUGca -5'
20421 5' -54.8 NC_004688.1 + 10656 0.67 0.851637
Target:  5'- gGGGCGgucaGCGCGGcguuguccgcGGCcUGGAUCGCGg -3'
miRNA:   3'- -CCUGCg---CGCGUC----------UUGcACCUAGUGCa -5'
20421 5' -54.8 NC_004688.1 + 110697 0.68 0.817951
Target:  5'- cGGGCGCGCGUGGcAUG-GcGAUUGCGa -3'
miRNA:   3'- -CCUGCGCGCGUCuUGCaC-CUAGUGCa -5'
20421 5' -54.8 NC_004688.1 + 31504 0.69 0.780521
Target:  5'- cGGCGCaaccuccGCGCAGAACGUu-GUCGCGg -3'
miRNA:   3'- cCUGCG-------CGCGUCUUGCAccUAGUGCa -5'
20421 5' -54.8 NC_004688.1 + 47499 0.7 0.71263
Target:  5'- uGAUGCucGUGUAGAgGCGUGGAUCGCc- -3'
miRNA:   3'- cCUGCG--CGCGUCU-UGCACCUAGUGca -5'
20421 5' -54.8 NC_004688.1 + 61211 0.73 0.557331
Target:  5'- gGGGCGuCGCGguGGAUcugGUGGAUCgGCGa -3'
miRNA:   3'- -CCUGC-GCGCguCUUG---CACCUAG-UGCa -5'
20421 5' -54.8 NC_004688.1 + 29541 0.77 0.353828
Target:  5'- uGGGCGUGCGCAGAGUGcGGGcCACGUc -3'
miRNA:   3'- -CCUGCGCGCGUCUUGCaCCUaGUGCA- -5'
20421 5' -54.8 NC_004688.1 + 11236 1.09 0.002801
Target:  5'- cGGACGCGCGCAGAACGUGGAUCACGUc -3'
miRNA:   3'- -CCUGCGCGCGUCUUGCACCUAGUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.