miRNA display CGI


Results 1 - 7 of 7 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20423 3' -55.7 NC_004688.1 + 91906 0.66 0.848857
Target:  5'- ---cCCCCGGGCaacgcGAUCaGGCGAa--- -3'
miRNA:   3'- caauGGGGCCCGa----CUAG-CCGCUauga -5'
20423 3' -55.7 NC_004688.1 + 88235 0.66 0.832164
Target:  5'- gGUUACgaggucggCCGGGCUGA-CGGUGAggGCg -3'
miRNA:   3'- -CAAUGg-------GGCCCGACUaGCCGCUa-UGa -5'
20423 3' -55.7 NC_004688.1 + 84584 0.67 0.814706
Target:  5'- -aUACCCCuccGGGaugaGGUCGGCGAU-CUu -3'
miRNA:   3'- caAUGGGG---CCCga--CUAGCCGCUAuGA- -5'
20423 3' -55.7 NC_004688.1 + 33546 0.7 0.656356
Target:  5'- ---uUCCCGGGCUGAcCGGCcugaccguuGAUACc -3'
miRNA:   3'- caauGGGGCCCGACUaGCCG---------CUAUGa -5'
20423 3' -55.7 NC_004688.1 + 100578 0.7 0.614413
Target:  5'- --cGCCCUgggGGGCUucuuugCGGCGAUACUg -3'
miRNA:   3'- caaUGGGG---CCCGAcua---GCCGCUAUGA- -5'
20423 3' -55.7 NC_004688.1 + 39191 0.76 0.317908
Target:  5'- gGUUACCgCCGGuuUGGUCGGCGGcGCUg -3'
miRNA:   3'- -CAAUGG-GGCCcgACUAGCCGCUaUGA- -5'
20423 3' -55.7 NC_004688.1 + 14224 1.08 0.002318
Target:  5'- cGUUACCCCGGGCUGAUCGGCGAUACUg -3'
miRNA:   3'- -CAAUGGGGCCCGACUAGCCGCUAUGA- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.