miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20426 3' -56.6 NC_004688.1 + 24217 0.66 0.8366
Target:  5'- cCGUCG-CGCccguGggGACCGUUgCCGGUg -3'
miRNA:   3'- -GUAGCgGCGu---CuuUUGGCGGaGGCCA- -5'
20426 3' -56.6 NC_004688.1 + 89881 0.66 0.828117
Target:  5'- -cUCGCCGCcuggccGggGuCCGCUUCCGuGg -3'
miRNA:   3'- guAGCGGCGu-----CuuUuGGCGGAGGC-Ca -5'
20426 3' -56.6 NC_004688.1 + 26203 0.66 0.828117
Target:  5'- --cUGCCGCAGcaccuGCCGCa-CCGGg -3'
miRNA:   3'- guaGCGGCGUCuuu--UGGCGgaGGCCa -5'
20426 3' -56.6 NC_004688.1 + 37630 0.66 0.810603
Target:  5'- gGUCGCCGgGGGccGCC-CCUCggCGGUg -3'
miRNA:   3'- gUAGCGGCgUCUuuUGGcGGAG--GCCA- -5'
20426 3' -56.6 NC_004688.1 + 51562 0.66 0.810603
Target:  5'- aCGUCGCCGCcGAGaucGACagaGCCcUCGGa -3'
miRNA:   3'- -GUAGCGGCGuCUU---UUGg--CGGaGGCCa -5'
20426 3' -56.6 NC_004688.1 + 73322 0.66 0.809709
Target:  5'- ---aGCCGCGGGAgugcagggacugcAGCCGCCgCCGa- -3'
miRNA:   3'- guagCGGCGUCUU-------------UUGGCGGaGGCca -5'
20426 3' -56.6 NC_004688.1 + 15855 0.66 0.80159
Target:  5'- --cCGCCGCAucAAACuUGCCgCCGGg -3'
miRNA:   3'- guaGCGGCGUcuUUUG-GCGGaGGCCa -5'
20426 3' -56.6 NC_004688.1 + 20375 0.66 0.798855
Target:  5'- uUAUCGCCaagcaggucggagcGCAGcuuGCCGUCUUCGGc -3'
miRNA:   3'- -GUAGCGG--------------CGUCuuuUGGCGGAGGCCa -5'
20426 3' -56.6 NC_004688.1 + 6794 0.66 0.792418
Target:  5'- gCGUCGUU-CAGGAAGCCGCCgcaggCCuGGg -3'
miRNA:   3'- -GUAGCGGcGUCUUUUGGCGGa----GG-CCa -5'
20426 3' -56.6 NC_004688.1 + 9092 0.67 0.783096
Target:  5'- uCGUCagcuuCCGCAaGGAACCgagaGCCUCCGGa -3'
miRNA:   3'- -GUAGc----GGCGUcUUUUGG----CGGAGGCCa -5'
20426 3' -56.6 NC_004688.1 + 90199 0.67 0.773633
Target:  5'- aGUUGCCGCGGAAuucGCUGUCUCgcacuaCGGc -3'
miRNA:   3'- gUAGCGGCGUCUUu--UGGCGGAG------GCCa -5'
20426 3' -56.6 NC_004688.1 + 79477 0.67 0.764039
Target:  5'- cCAUCGCCGCGGucucggcugauAGGCCaCCcgcUCCGGc -3'
miRNA:   3'- -GUAGCGGCGUCu----------UUUGGcGG---AGGCCa -5'
20426 3' -56.6 NC_004688.1 + 13460 0.67 0.761137
Target:  5'- -cUCGCgGCuGAAAACCGUCUugaucacccauggaUCGGUg -3'
miRNA:   3'- guAGCGgCGuCUUUUGGCGGA--------------GGCCA- -5'
20426 3' -56.6 NC_004688.1 + 81203 0.67 0.754323
Target:  5'- --cCGCCGUugcgcuGAACCGCCgucCCGGa -3'
miRNA:   3'- guaGCGGCGucu---UUUGGCGGa--GGCCa -5'
20426 3' -56.6 NC_004688.1 + 294 0.67 0.743508
Target:  5'- aGUCGCUGCAGuauuucggggggcGGccCCGCC-CCGGUu -3'
miRNA:   3'- gUAGCGGCGUC-------------UUuuGGCGGaGGCCA- -5'
20426 3' -56.6 NC_004688.1 + 68168 0.68 0.714441
Target:  5'- --cCGCCGguGAGGAuuCCGCgCUCgGGa -3'
miRNA:   3'- guaGCGGCguCUUUU--GGCG-GAGgCCa -5'
20426 3' -56.6 NC_004688.1 + 98189 0.68 0.714441
Target:  5'- -cUUGCCGCAcGAAACgGCacgaUCCGGg -3'
miRNA:   3'- guAGCGGCGUcUUUUGgCGg---AGGCCa -5'
20426 3' -56.6 NC_004688.1 + 4586 0.68 0.704265
Target:  5'- aAUCGCUuccugcccgGCAGAGGAUuuaGCUUCCGGg -3'
miRNA:   3'- gUAGCGG---------CGUCUUUUGg--CGGAGGCCa -5'
20426 3' -56.6 NC_004688.1 + 28383 0.68 0.694025
Target:  5'- gGUCGCCGaaguuGguGACCGCCagguggCCGGa -3'
miRNA:   3'- gUAGCGGCgu---CuuUUGGCGGa-----GGCCa -5'
20426 3' -56.6 NC_004688.1 + 28332 0.69 0.673393
Target:  5'- uGUCGCCgaacgaccaGCGGuuGACCGCCggCGGa -3'
miRNA:   3'- gUAGCGG---------CGUCuuUUGGCGGagGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.