miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20426 5' -48.9 NC_004688.1 + 79958 0.66 0.996496
Target:  5'- uGCGguGGAGGgcCAugGGCUuguCGGACg- -3'
miRNA:   3'- -UGUguCUUUU--GUugCCGAu--GCCUGac -5'
20426 5' -48.9 NC_004688.1 + 42519 0.66 0.995859
Target:  5'- gGCGCGGuauuucGACAGCgaGGCgauCGGAUUGa -3'
miRNA:   3'- -UGUGUCuu----UUGUUG--CCGau-GCCUGAC- -5'
20426 5' -48.9 NC_004688.1 + 358 0.66 0.995859
Target:  5'- cCACAGGccccgcacuGAACAuacuCgGGCUuaACGGGCUGa -3'
miRNA:   3'- uGUGUCU---------UUUGUu---G-CCGA--UGCCUGAC- -5'
20426 5' -48.9 NC_004688.1 + 25095 0.66 0.994302
Target:  5'- -aACGG-AAGCAugGuGUUGCGGGCg- -3'
miRNA:   3'- ugUGUCuUUUGUugC-CGAUGCCUGac -5'
20426 5' -48.9 NC_004688.1 + 26052 0.67 0.991114
Target:  5'- aGCACcGggGGC-ACGGCUcCGGGgaGg -3'
miRNA:   3'- -UGUGuCuuUUGuUGCCGAuGCCUgaC- -5'
20426 5' -48.9 NC_004688.1 + 3146 0.67 0.990987
Target:  5'- aGCACgccuugaGGAGAACAuccucgagcgGCGGCaGCGGGCc- -3'
miRNA:   3'- -UGUG-------UCUUUUGU----------UGCCGaUGCCUGac -5'
20426 5' -48.9 NC_004688.1 + 48156 0.67 0.989784
Target:  5'- cUACAGcc-GCAAUGGCgagaucGCGGAUUGg -3'
miRNA:   3'- uGUGUCuuuUGUUGCCGa-----UGCCUGAC- -5'
20426 5' -48.9 NC_004688.1 + 98799 0.67 0.988304
Target:  5'- -aGCGGggGGCG--GGCcaGCGGGCUGg -3'
miRNA:   3'- ugUGUCuuUUGUugCCGa-UGCCUGAC- -5'
20426 5' -48.9 NC_004688.1 + 51699 0.68 0.98427
Target:  5'- cGCGCAGAAGAuCAugaucGCGGUUcagcgccgacaccgGCGGACg- -3'
miRNA:   3'- -UGUGUCUUUU-GU-----UGCCGA--------------UGCCUGac -5'
20426 5' -48.9 NC_004688.1 + 44065 0.68 0.982854
Target:  5'- cGCGcCAGAcguAGGCAAaGGCcaccGCGGACUGg -3'
miRNA:   3'- -UGU-GUCU---UUUGUUgCCGa---UGCCUGAC- -5'
20426 5' -48.9 NC_004688.1 + 108181 0.68 0.978277
Target:  5'- cGCGCAGcaucGAACuuAGCGGC-GCGGACa- -3'
miRNA:   3'- -UGUGUCu---UUUG--UUGCCGaUGCCUGac -5'
20426 5' -48.9 NC_004688.1 + 19241 0.69 0.966519
Target:  5'- -gACGGAGAugAACGGCaGCGG-Cg- -3'
miRNA:   3'- ugUGUCUUUugUUGCCGaUGCCuGac -5'
20426 5' -48.9 NC_004688.1 + 108938 0.69 0.966519
Target:  5'- uGCGCAaAGAugAAuCGGCuUACGGugUGa -3'
miRNA:   3'- -UGUGUcUUUugUU-GCCG-AUGCCugAC- -5'
20426 5' -48.9 NC_004688.1 + 52384 0.7 0.955162
Target:  5'- cACGCGGAGAA--GCGGUggUGCGGggACUGg -3'
miRNA:   3'- -UGUGUCUUUUguUGCCG--AUGCC--UGAC- -5'
20426 5' -48.9 NC_004688.1 + 53227 0.7 0.946285
Target:  5'- gGCGCGGuauuGGCgccagGugGGCUACGGACc- -3'
miRNA:   3'- -UGUGUCuu--UUG-----UugCCGAUGCCUGac -5'
20426 5' -48.9 NC_004688.1 + 23462 0.71 0.93093
Target:  5'- aGCGCAuuGGugAACGGUgcgauaGCGGGCUGa -3'
miRNA:   3'- -UGUGUcuUUugUUGCCGa-----UGCCUGAC- -5'
20426 5' -48.9 NC_004688.1 + 50690 0.71 0.925258
Target:  5'- cGCACGGAAcggauuuCGAcCGGCUGCGGggcaaaGCUGa -3'
miRNA:   3'- -UGUGUCUUuu-----GUU-GCCGAUGCC------UGAC- -5'
20426 5' -48.9 NC_004688.1 + 67604 0.76 0.706562
Target:  5'- -gGCAGGAGGucguCGGCGGCggucgGCGGGCUGa -3'
miRNA:   3'- ugUGUCUUUU----GUUGCCGa----UGCCUGAC- -5'
20426 5' -48.9 NC_004688.1 + 15547 1.08 0.010707
Target:  5'- gACACAGAAAACAACGGCUACGGACUGc -3'
miRNA:   3'- -UGUGUCUUUUGUUGCCGAUGCCUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.