miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20427 5' -55.3 NC_004688.1 + 102385 0.66 0.878507
Target:  5'- cGUUGagcaGGUGugGCCGGcGGagcaGGUGuGGCCg -3'
miRNA:   3'- aUAAC----CCAUugCGGCC-CC----CCAC-UUGG- -5'
20427 5' -55.3 NC_004688.1 + 39701 0.66 0.863434
Target:  5'- cUGUUGGGggugGGcCGuCCGGcGGGGUugguuucucGGGCCu -3'
miRNA:   3'- -AUAACCCa---UU-GC-GGCC-CCCCA---------CUUGG- -5'
20427 5' -55.3 NC_004688.1 + 8553 0.67 0.847484
Target:  5'- --aUGGGgauCGaCCGGuguucGGGGUGAuCCg -3'
miRNA:   3'- auaACCCauuGC-GGCC-----CCCCACUuGG- -5'
20427 5' -55.3 NC_004688.1 + 34922 0.67 0.828129
Target:  5'- ---cGGGUugAACGUgucagcgaucgacgCGGGGGGaggaacUGGACCg -3'
miRNA:   3'- auaaCCCA--UUGCG--------------GCCCCCC------ACUUGG- -5'
20427 5' -55.3 NC_004688.1 + 51622 0.67 0.80415
Target:  5'- ---aGGGU-ACG-CGGGuGGGUGAAUg -3'
miRNA:   3'- auaaCCCAuUGCgGCCC-CCCACUUGg -5'
20427 5' -55.3 NC_004688.1 + 39796 0.68 0.776114
Target:  5'- -uUUGGGUGcggcgucuGCGaCUGcGGGGGUGAGg- -3'
miRNA:   3'- auAACCCAU--------UGC-GGC-CCCCCACUUgg -5'
20427 5' -55.3 NC_004688.1 + 31475 0.68 0.75673
Target:  5'- ---cGGGcGAgGCCGGGG--UGGACCa -3'
miRNA:   3'- auaaCCCaUUgCGGCCCCccACUUGG- -5'
20427 5' -55.3 NC_004688.1 + 33993 0.68 0.755748
Target:  5'- --gUGGGggGCGUCGGGGGcGUcaaauccGggUCa -3'
miRNA:   3'- auaACCCauUGCGGCCCCC-CA-------CuuGG- -5'
20427 5' -55.3 NC_004688.1 + 35271 0.69 0.696116
Target:  5'- ---cGGGUAuagcccGCgGCCGGGGGGuUGGAg- -3'
miRNA:   3'- auaaCCCAU------UG-CGGCCCCCC-ACUUgg -5'
20427 5' -55.3 NC_004688.1 + 71043 0.72 0.570741
Target:  5'- --aUGGGcuuGCGCCagcgcuuGGGGGUGAGCg -3'
miRNA:   3'- auaACCCau-UGCGGc------CCCCCACUUGg -5'
20427 5' -55.3 NC_004688.1 + 74044 0.72 0.559373
Target:  5'- ---cGGGUGgugaGCGCCGccccaucGGGGGUGAggGCUa -3'
miRNA:   3'- auaaCCCAU----UGCGGC-------CCCCCACU--UGG- -5'
20427 5' -55.3 NC_004688.1 + 42936 0.81 0.179036
Target:  5'- ---gGGGUGGCGCCGGGuGG-GGACCg -3'
miRNA:   3'- auaaCCCAUUGCGGCCCcCCaCUUGG- -5'
20427 5' -55.3 NC_004688.1 + 15695 1.09 0.002296
Target:  5'- cUAUUGGGUAACGCCGGGGGGUGAACCc -3'
miRNA:   3'- -AUAACCCAUUGCGGCCCCCCACUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.