miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2043 3' -50.5 NC_001347.2 + 90784 0.66 0.999526
Target:  5'- gGGUGGAuccuCCGUCGuccUCG-CGGccGCCa -3'
miRNA:   3'- gUCACCU----GGCAGUuaaAGCuGCC--UGG- -5'
2043 3' -50.5 NC_001347.2 + 173106 0.66 0.999416
Target:  5'- -cGUGGAUCua-GAUUUCGGCGugguGGCCg -3'
miRNA:   3'- guCACCUGGcagUUAAAGCUGC----CUGG- -5'
2043 3' -50.5 NC_001347.2 + 11834 0.66 0.999127
Target:  5'- ---gGGGCCGUUg--UUCGGaGGACCc -3'
miRNA:   3'- gucaCCUGGCAGuuaAAGCUgCCUGG- -5'
2043 3' -50.5 NC_001347.2 + 182187 0.66 0.998942
Target:  5'- -uGUGGGCCGgcccUCGGggugcgggUGGCGGGCUg -3'
miRNA:   3'- guCACCUGGC----AGUUaaa-----GCUGCCUGG- -5'
2043 3' -50.5 NC_001347.2 + 1152 0.66 0.998942
Target:  5'- cCGGUGGAgCGcCAGgcgcUGACGGAgCu -3'
miRNA:   3'- -GUCACCUgGCaGUUaaa-GCUGCCUgG- -5'
2043 3' -50.5 NC_001347.2 + 168233 0.66 0.998942
Target:  5'- -cGUGGcaGCCGUUuccagcugcguGAUcaccCGGCGGACCa -3'
miRNA:   3'- guCACC--UGGCAG-----------UUAaa--GCUGCCUGG- -5'
2043 3' -50.5 NC_001347.2 + 149287 0.66 0.99888
Target:  5'- -uGUGGAUCcgcugacgcguuugGUCAucgaUCGGCGGAUCa -3'
miRNA:   3'- guCACCUGG--------------CAGUuaa-AGCUGCCUGG- -5'
2043 3' -50.5 NC_001347.2 + 7954 0.67 0.998724
Target:  5'- uGGUGcGACUGaCGGUggCGGCGGcagACCa -3'
miRNA:   3'- gUCAC-CUGGCaGUUAaaGCUGCC---UGG- -5'
2043 3' -50.5 NC_001347.2 + 172150 0.67 0.998469
Target:  5'- -uGUGGggcgugacGCCGUCAGUgugggcUUCGcGCGGcACCg -3'
miRNA:   3'- guCACC--------UGGCAGUUA------AAGC-UGCC-UGG- -5'
2043 3' -50.5 NC_001347.2 + 24914 0.67 0.998172
Target:  5'- aCGGUGGGCCuuaucuucgccgGUCAcuUUUCGcaGCGGuCCu -3'
miRNA:   3'- -GUCACCUGG------------CAGUu-AAAGC--UGCCuGG- -5'
2043 3' -50.5 NC_001347.2 + 1736 0.67 0.998139
Target:  5'- gCGGUGGGCCGgCA----CGACGGuggcgcugcagacGCCg -3'
miRNA:   3'- -GUCACCUGGCaGUuaaaGCUGCC-------------UGG- -5'
2043 3' -50.5 NC_001347.2 + 105946 0.67 0.997828
Target:  5'- gCGGcUGGACCG-CGAgcgcagcgUCGGCGaGCCg -3'
miRNA:   3'- -GUC-ACCUGGCaGUUaa------AGCUGCcUGG- -5'
2043 3' -50.5 NC_001347.2 + 188617 0.67 0.997828
Target:  5'- cCGGgagGGuCCGUCGGgacagcgCGugGGACg -3'
miRNA:   3'- -GUCa--CCuGGCAGUUaaa----GCugCCUGg -5'
2043 3' -50.5 NC_001347.2 + 12892 0.68 0.996976
Target:  5'- ---gGGACCGUgGAgcgUGuACGGGCCu -3'
miRNA:   3'- gucaCCUGGCAgUUaaaGC-UGCCUGG- -5'
2043 3' -50.5 NC_001347.2 + 139342 0.68 0.995053
Target:  5'- gCGGUGGGCUGUCAGgcguccgagaCGACuGugCa -3'
miRNA:   3'- -GUCACCUGGCAGUUaaa-------GCUGcCugG- -5'
2043 3' -50.5 NC_001347.2 + 12005 0.69 0.991589
Target:  5'- gCAGcGcGGCUGUCAc---CGACGGGCCc -3'
miRNA:   3'- -GUCaC-CUGGCAGUuaaaGCUGCCUGG- -5'
2043 3' -50.5 NC_001347.2 + 19277 0.69 0.991589
Target:  5'- gCGGUGGGCC-UgAAg--CGAUGGACUc -3'
miRNA:   3'- -GUCACCUGGcAgUUaaaGCUGCCUGG- -5'
2043 3' -50.5 NC_001347.2 + 135813 0.7 0.987686
Target:  5'- gGGUGGACCGggAAgc-CGGCGGaggucGCCg -3'
miRNA:   3'- gUCACCUGGCagUUaaaGCUGCC-----UGG- -5'
2043 3' -50.5 NC_001347.2 + 36444 0.7 0.987686
Target:  5'- ---cGGuCCGUCGAgacCGGCGGACg -3'
miRNA:   3'- gucaCCuGGCAGUUaaaGCUGCCUGg -5'
2043 3' -50.5 NC_001347.2 + 37463 0.7 0.987229
Target:  5'- aCAGgcaugGGuCUGUCGAUUUCGGCGccucgucguugaguGGCCu -3'
miRNA:   3'- -GUCa----CCuGGCAGUUAAAGCUGC--------------CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.