Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
2043 | 3' | -50.5 | NC_001347.2 | + | 90784 | 0.66 | 0.999526 |
Target: 5'- gGGUGGAuccuCCGUCGuccUCG-CGGccGCCa -3' miRNA: 3'- gUCACCU----GGCAGUuaaAGCuGCC--UGG- -5' |
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2043 | 3' | -50.5 | NC_001347.2 | + | 149287 | 0.66 | 0.99888 |
Target: 5'- -uGUGGAUCcgcugacgcguuugGUCAucgaUCGGCGGAUCa -3' miRNA: 3'- guCACCUGG--------------CAGUuaa-AGCUGCCUGG- -5' |
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2043 | 3' | -50.5 | NC_001347.2 | + | 182187 | 0.66 | 0.998942 |
Target: 5'- -uGUGGGCCGgcccUCGGggugcgggUGGCGGGCUg -3' miRNA: 3'- guCACCUGGC----AGUUaaa-----GCUGCCUGG- -5' |
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2043 | 3' | -50.5 | NC_001347.2 | + | 1152 | 0.66 | 0.998942 |
Target: 5'- cCGGUGGAgCGcCAGgcgcUGACGGAgCu -3' miRNA: 3'- -GUCACCUgGCaGUUaaa-GCUGCCUgG- -5' |
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2043 | 3' | -50.5 | NC_001347.2 | + | 11834 | 0.66 | 0.999127 |
Target: 5'- ---gGGGCCGUUg--UUCGGaGGACCc -3' miRNA: 3'- gucaCCUGGCAGuuaAAGCUgCCUGG- -5' |
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2043 | 3' | -50.5 | NC_001347.2 | + | 173106 | 0.66 | 0.999416 |
Target: 5'- -cGUGGAUCua-GAUUUCGGCGugguGGCCg -3' miRNA: 3'- guCACCUGGcagUUAAAGCUGC----CUGG- -5' |
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2043 | 3' | -50.5 | NC_001347.2 | + | 168233 | 0.66 | 0.998942 |
Target: 5'- -cGUGGcaGCCGUUuccagcugcguGAUcaccCGGCGGACCa -3' miRNA: 3'- guCACC--UGGCAG-----------UUAaa--GCUGCCUGG- -5' |
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2043 | 3' | -50.5 | NC_001347.2 | + | 188617 | 0.67 | 0.997828 |
Target: 5'- cCGGgagGGuCCGUCGGgacagcgCGugGGACg -3' miRNA: 3'- -GUCa--CCuGGCAGUUaaa----GCugCCUGg -5' |
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2043 | 3' | -50.5 | NC_001347.2 | + | 105946 | 0.67 | 0.997828 |
Target: 5'- gCGGcUGGACCG-CGAgcgcagcgUCGGCGaGCCg -3' miRNA: 3'- -GUC-ACCUGGCaGUUaa------AGCUGCcUGG- -5' |
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2043 | 3' | -50.5 | NC_001347.2 | + | 24914 | 0.67 | 0.998172 |
Target: 5'- aCGGUGGGCCuuaucuucgccgGUCAcuUUUCGcaGCGGuCCu -3' miRNA: 3'- -GUCACCUGG------------CAGUu-AAAGC--UGCCuGG- -5' |
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2043 | 3' | -50.5 | NC_001347.2 | + | 1736 | 0.67 | 0.998139 |
Target: 5'- gCGGUGGGCCGgCA----CGACGGuggcgcugcagacGCCg -3' miRNA: 3'- -GUCACCUGGCaGUuaaaGCUGCC-------------UGG- -5' |
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2043 | 3' | -50.5 | NC_001347.2 | + | 172150 | 0.67 | 0.998469 |
Target: 5'- -uGUGGggcgugacGCCGUCAGUgugggcUUCGcGCGGcACCg -3' miRNA: 3'- guCACC--------UGGCAGUUA------AAGC-UGCC-UGG- -5' |
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2043 | 3' | -50.5 | NC_001347.2 | + | 7954 | 0.67 | 0.998724 |
Target: 5'- uGGUGcGACUGaCGGUggCGGCGGcagACCa -3' miRNA: 3'- gUCAC-CUGGCaGUUAaaGCUGCC---UGG- -5' |
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2043 | 3' | -50.5 | NC_001347.2 | + | 139342 | 0.68 | 0.995053 |
Target: 5'- gCGGUGGGCUGUCAGgcguccgagaCGACuGugCa -3' miRNA: 3'- -GUCACCUGGCAGUUaaa-------GCUGcCugG- -5' |
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2043 | 3' | -50.5 | NC_001347.2 | + | 12892 | 0.68 | 0.996976 |
Target: 5'- ---gGGACCGUgGAgcgUGuACGGGCCu -3' miRNA: 3'- gucaCCUGGCAgUUaaaGC-UGCCUGG- -5' |
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2043 | 3' | -50.5 | NC_001347.2 | + | 12005 | 0.69 | 0.991589 |
Target: 5'- gCAGcGcGGCUGUCAc---CGACGGGCCc -3' miRNA: 3'- -GUCaC-CUGGCAGUuaaaGCUGCCUGG- -5' |
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2043 | 3' | -50.5 | NC_001347.2 | + | 19277 | 0.69 | 0.991589 |
Target: 5'- gCGGUGGGCC-UgAAg--CGAUGGACUc -3' miRNA: 3'- -GUCACCUGGcAgUUaaaGCUGCCUGG- -5' |
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2043 | 3' | -50.5 | NC_001347.2 | + | 135813 | 0.7 | 0.987686 |
Target: 5'- gGGUGGACCGggAAgc-CGGCGGaggucGCCg -3' miRNA: 3'- gUCACCUGGCagUUaaaGCUGCC-----UGG- -5' |
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2043 | 3' | -50.5 | NC_001347.2 | + | 36444 | 0.7 | 0.987686 |
Target: 5'- ---cGGuCCGUCGAgacCGGCGGACg -3' miRNA: 3'- gucaCCuGGCAGUUaaaGCUGCCUGg -5' |
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2043 | 3' | -50.5 | NC_001347.2 | + | 128450 | 0.7 | 0.980466 |
Target: 5'- -cGUGG-CCGUCAAg--CGGCGcGACg -3' miRNA: 3'- guCACCuGGCAGUUaaaGCUGC-CUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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