miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20430 5' -54.9 NC_004688.1 + 31657 0.66 0.902713
Target:  5'- gGCCGcgCAGGgcGGacagcucggcCGAgGUCUugGGCg -3'
miRNA:   3'- -UGGUa-GUCCaaCC----------GCUgUAGGugCCG- -5'
20430 5' -54.9 NC_004688.1 + 16954 0.66 0.896107
Target:  5'- gGCCuguUCGGGgccgcUGGCgGGCuucaaCACGGCg -3'
miRNA:   3'- -UGGu--AGUCCa----ACCG-CUGuag--GUGCCG- -5'
20430 5' -54.9 NC_004688.1 + 54072 0.66 0.896107
Target:  5'- -gCGUCAGGcccucaaaGCGGCccaucUCCGCGGCa -3'
miRNA:   3'- ugGUAGUCCaac-----CGCUGu----AGGUGCCG- -5'
20430 5' -54.9 NC_004688.1 + 54323 0.66 0.889257
Target:  5'- gGCCcagCGGuacucgccGUUGGUGAUGUgcCCGCGGCg -3'
miRNA:   3'- -UGGua-GUC--------CAACCGCUGUA--GGUGCCG- -5'
20430 5' -54.9 NC_004688.1 + 12509 0.66 0.882168
Target:  5'- cCCGagAGGUgccgaccGGUGACAUCUccgACGGUg -3'
miRNA:   3'- uGGUagUCCAa------CCGCUGUAGG---UGCCG- -5'
20430 5' -54.9 NC_004688.1 + 75436 0.66 0.874845
Target:  5'- cCCGUCGaauccGGUaaUGGCGACA-CCG-GGCu -3'
miRNA:   3'- uGGUAGU-----CCA--ACCGCUGUaGGUgCCG- -5'
20430 5' -54.9 NC_004688.1 + 8385 0.67 0.867292
Target:  5'- cGCCcUCGGGgauUGGUGGCGcgucuucCCACGcGCg -3'
miRNA:   3'- -UGGuAGUCCa--ACCGCUGUa------GGUGC-CG- -5'
20430 5' -54.9 NC_004688.1 + 27870 0.67 0.859515
Target:  5'- gACCGUggcguaCGGGUugauaccgccacUGGCGAUcgaagccucgAUCUGCGGCa -3'
miRNA:   3'- -UGGUA------GUCCA------------ACCGCUG----------UAGGUGCCG- -5'
20430 5' -54.9 NC_004688.1 + 20904 0.67 0.859515
Target:  5'- gGCCAUCucGccGGCGACcgCaACGGCc -3'
miRNA:   3'- -UGGUAGucCaaCCGCUGuaGgUGCCG- -5'
20430 5' -54.9 NC_004688.1 + 55243 0.67 0.851522
Target:  5'- gGCCAggaGGGUcuGCG-CAcCCGCGGCa -3'
miRNA:   3'- -UGGUag-UCCAacCGCuGUaGGUGCCG- -5'
20430 5' -54.9 NC_004688.1 + 71164 0.67 0.843318
Target:  5'- uUCAUCGGGcgccgggGGCG-CGUCCAgccauuCGGCu -3'
miRNA:   3'- uGGUAGUCCaa-----CCGCuGUAGGU------GCCG- -5'
20430 5' -54.9 NC_004688.1 + 51181 0.67 0.834912
Target:  5'- -gCAUCugcGGGUggucGGCGGCAggCgACGGCg -3'
miRNA:   3'- ugGUAG---UCCAa---CCGCUGUa-GgUGCCG- -5'
20430 5' -54.9 NC_004688.1 + 84096 0.67 0.834912
Target:  5'- -gCAUCAGGagGGCGuCG-CUGCGGUg -3'
miRNA:   3'- ugGUAGUCCaaCCGCuGUaGGUGCCG- -5'
20430 5' -54.9 NC_004688.1 + 16681 0.67 0.82631
Target:  5'- uGCgGUaGGGUUGG-GGCAUC-GCGGCg -3'
miRNA:   3'- -UGgUAgUCCAACCgCUGUAGgUGCCG- -5'
20430 5' -54.9 NC_004688.1 + 103784 0.68 0.817523
Target:  5'- cGCCGUacgaacUAGGUaaggcuUGGgGAUA-CCGCGGCg -3'
miRNA:   3'- -UGGUA------GUCCA------ACCgCUGUaGGUGCCG- -5'
20430 5' -54.9 NC_004688.1 + 4002 0.68 0.817523
Target:  5'- cGCCGUcCAGac-GGCGGCGUgcaCGCGGCc -3'
miRNA:   3'- -UGGUA-GUCcaaCCGCUGUAg--GUGCCG- -5'
20430 5' -54.9 NC_004688.1 + 64243 0.68 0.799422
Target:  5'- cGCCAuUUAGG-UGGCGGCAgUCCAgcguCGGg -3'
miRNA:   3'- -UGGU-AGUCCaACCGCUGU-AGGU----GCCg -5'
20430 5' -54.9 NC_004688.1 + 20512 0.68 0.799422
Target:  5'- uGCCAUCGuuGUccugGGUGACGUCgaagcgCACGGCg -3'
miRNA:   3'- -UGGUAGUc-CAa---CCGCUGUAG------GUGCCG- -5'
20430 5' -54.9 NC_004688.1 + 94616 0.68 0.780682
Target:  5'- aGCCAUCccauuuuacaggGGGUgacugGGCGccCAUCCACcagGGCg -3'
miRNA:   3'- -UGGUAG------------UCCAa----CCGCu-GUAGGUG---CCG- -5'
20430 5' -54.9 NC_004688.1 + 101644 0.7 0.711177
Target:  5'- gGCCAUC----UGGCGcACGUCCaggACGGCg -3'
miRNA:   3'- -UGGUAGuccaACCGC-UGUAGG---UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.