miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20431 5' -63.3 NC_004688.1 + 76377 0.66 0.517774
Target:  5'- gGgUCCAGa-GCGGgaaCGgGAGGCCCa -3'
miRNA:   3'- aCgGGGUCgaCGCCag-GUgCUCCGGG- -5'
20431 5' -63.3 NC_004688.1 + 8567 0.66 0.517774
Target:  5'- -cCUCCA--UGCGGUCCAUGGGGaucgaCCg -3'
miRNA:   3'- acGGGGUcgACGCCAGGUGCUCCg----GG- -5'
20431 5' -63.3 NC_004688.1 + 34589 0.66 0.517774
Target:  5'- gUGCCCCAucGUgaucGCGGUaCCGuuCGGGauGCCCg -3'
miRNA:   3'- -ACGGGGU--CGa---CGCCA-GGU--GCUC--CGGG- -5'
20431 5' -63.3 NC_004688.1 + 703 0.66 0.517774
Target:  5'- cGCCCgCaccagucgcaggGGCUGCcGUCCACauGAGccGCCCg -3'
miRNA:   3'- aCGGG-G------------UCGACGcCAGGUG--CUC--CGGG- -5'
20431 5' -63.3 NC_004688.1 + 6535 0.66 0.515865
Target:  5'- cGCCCUcgGGCgUGCGGUagaggaucagggCGCGAGcGCCg -3'
miRNA:   3'- aCGGGG--UCG-ACGCCAg-----------GUGCUC-CGGg -5'
20431 5' -63.3 NC_004688.1 + 98525 0.66 0.508261
Target:  5'- aUGCCCaccauuGCaUGCGGcgUCCGuCGAGGCg- -3'
miRNA:   3'- -ACGGGgu----CG-ACGCC--AGGU-GCUCCGgg -5'
20431 5' -63.3 NC_004688.1 + 46781 0.66 0.498824
Target:  5'- cGCCUCAGUUucccgaucacucGCGGgaucgCCcgGCG-GGCCCu -3'
miRNA:   3'- aCGGGGUCGA------------CGCCa----GG--UGCuCCGGG- -5'
20431 5' -63.3 NC_004688.1 + 54403 0.66 0.497884
Target:  5'- gUGgCCCGGC--CGGUCUcgGCGAucuccucGGCCCg -3'
miRNA:   3'- -ACgGGGUCGacGCCAGG--UGCU-------CCGGG- -5'
20431 5' -63.3 NC_004688.1 + 4002 0.66 0.489465
Target:  5'- cGCCguCCAGacgGCGGcgUgCACGcGGCCCa -3'
miRNA:   3'- aCGG--GGUCga-CGCC--AgGUGCuCCGGG- -5'
20431 5' -63.3 NC_004688.1 + 39657 0.66 0.480189
Target:  5'- cGCCCC-GCcggGCGGUgUcucaaguugAUGGGGCCUa -3'
miRNA:   3'- aCGGGGuCGa--CGCCAgG---------UGCUCCGGG- -5'
20431 5' -63.3 NC_004688.1 + 42526 0.66 0.480189
Target:  5'- cGCCCuCGGC-GCGGUauuucgacaGCGAGGCg- -3'
miRNA:   3'- aCGGG-GUCGaCGCCAgg-------UGCUCCGgg -5'
20431 5' -63.3 NC_004688.1 + 73941 0.66 0.480189
Target:  5'- gGCcgCCCAGCccuCGG-CCGCGAGGCg- -3'
miRNA:   3'- aCG--GGGUCGac-GCCaGGUGCUCCGgg -5'
20431 5' -63.3 NC_004688.1 + 36851 0.66 0.480189
Target:  5'- gGUgCCGGUgGUGGUCgcguucagaUACGAGGCCg -3'
miRNA:   3'- aCGgGGUCGaCGCCAG---------GUGCUCCGGg -5'
20431 5' -63.3 NC_004688.1 + 51375 0.66 0.471
Target:  5'- gGUCUCGGgUcGCGGUCgCACcGGGCCg -3'
miRNA:   3'- aCGGGGUCgA-CGCCAG-GUGcUCCGGg -5'
20431 5' -63.3 NC_004688.1 + 24265 0.66 0.471
Target:  5'- aUGCCCgugguagcGCUGCGGcCCGCGuucGGGUUCc -3'
miRNA:   3'- -ACGGGgu------CGACGCCaGGUGC---UCCGGG- -5'
20431 5' -63.3 NC_004688.1 + 26059 0.66 0.471
Target:  5'- cGCCCgCAGCaccgGgGGcacggcUCCgGgGAGGCCCg -3'
miRNA:   3'- aCGGG-GUCGa---CgCC------AGG-UgCUCCGGG- -5'
20431 5' -63.3 NC_004688.1 + 24213 0.66 0.4619
Target:  5'- cGCgCCCGuggggaccGUUGcCGGUgCC-CGGGGCCCc -3'
miRNA:   3'- aCG-GGGU--------CGAC-GCCA-GGuGCUCCGGG- -5'
20431 5' -63.3 NC_004688.1 + 67093 0.66 0.460995
Target:  5'- gGCUCCAGC-GCGGcaucgaucaaUCCGagccgauggagacCGuGGCCCa -3'
miRNA:   3'- aCGGGGUCGaCGCC----------AGGU-------------GCuCCGGG- -5'
20431 5' -63.3 NC_004688.1 + 24345 0.67 0.456486
Target:  5'- cGCCCCcgucggcagcaGGCggcaacggaacgucaUGCGGagcCCACGgaggaAGGCCCg -3'
miRNA:   3'- aCGGGG-----------UCG---------------ACGCCa--GGUGC-----UCCGGG- -5'
20431 5' -63.3 NC_004688.1 + 67597 0.67 0.452895
Target:  5'- gGUCgUCGGCgGCGGUCgGCgggcuGAGGUCCa -3'
miRNA:   3'- aCGG-GGUCGaCGCCAGgUG-----CUCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.