miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20432 3' -62 NC_004688.1 + 54332 0.65 0.633287
Target:  5'- cCCGUCGaaggcccagcgguacUCGCCGuuGGugaugugcccgcggcGGCCGGGGa -3'
miRNA:   3'- cGGCGGU---------------AGUGGCggCC---------------UUGGCCCCc -5'
20432 3' -62 NC_004688.1 + 48289 0.66 0.625383
Target:  5'- -aCGCCucgaUugCGCCGGAcaaCGGGGa -3'
miRNA:   3'- cgGCGGua--GugGCGGCCUug-GCCCCc -5'
20432 3' -62 NC_004688.1 + 33912 0.66 0.615508
Target:  5'- -gCGCCAUUGCCGCCGGA-CUGa--- -3'
miRNA:   3'- cgGCGGUAGUGGCGGCCUuGGCcccc -5'
20432 3' -62 NC_004688.1 + 684 0.66 0.615508
Target:  5'- gGCUGCCGUcCACaugaGCCGc--CCGGaGGGc -3'
miRNA:   3'- -CGGCGGUA-GUGg---CGGCcuuGGCC-CCC- -5'
20432 3' -62 NC_004688.1 + 39875 0.66 0.605645
Target:  5'- cGgCGCCugcuCCGCCGGGuCCGGuGGc -3'
miRNA:   3'- -CgGCGGuaguGGCGGCCUuGGCC-CCc -5'
20432 3' -62 NC_004688.1 + 10688 0.66 0.5958
Target:  5'- aGCCGuCCGUCAggUCGaCCucaugGGcGCUGGGGGc -3'
miRNA:   3'- -CGGC-GGUAGU--GGC-GG-----CCuUGGCCCCC- -5'
20432 3' -62 NC_004688.1 + 26309 0.66 0.5958
Target:  5'- -aCGCCGagGCCGCCGcc-CUGGGGc -3'
miRNA:   3'- cgGCGGUagUGGCGGCcuuGGCCCCc -5'
20432 3' -62 NC_004688.1 + 61816 0.66 0.5958
Target:  5'- uGCCGCgGg-GCuCGUCGGAGCUGcGGGu -3'
miRNA:   3'- -CGGCGgUagUG-GCGGCCUUGGC-CCCc -5'
20432 3' -62 NC_004688.1 + 273 0.66 0.5958
Target:  5'- gGCgGCCc-CGCC-CCGGuuuCCGGGGa -3'
miRNA:   3'- -CGgCGGuaGUGGcGGCCuu-GGCCCCc -5'
20432 3' -62 NC_004688.1 + 100591 0.66 0.58598
Target:  5'- cGCUGgCGcUCACCGCC----CUGGGGGg -3'
miRNA:   3'- -CGGCgGU-AGUGGCGGccuuGGCCCCC- -5'
20432 3' -62 NC_004688.1 + 40543 0.66 0.58598
Target:  5'- uGUauCCAUCGCUGCCGuGcACCGGGa- -3'
miRNA:   3'- -CGgcGGUAGUGGCGGC-CuUGGCCCcc -5'
20432 3' -62 NC_004688.1 + 62453 0.67 0.560609
Target:  5'- uCCGCCgguugaagcuuuuaaGUUuugcCCGCCGGcucuuGGCCGGGGa -3'
miRNA:   3'- cGGCGG---------------UAGu---GGCGGCC-----UUGGCCCCc -5'
20432 3' -62 NC_004688.1 + 26202 0.67 0.560609
Target:  5'- uGCCGCag-CACCugccgcaccgggcauGCCGGuGCCGGGc- -3'
miRNA:   3'- -CGGCGguaGUGG---------------CGGCCuUGGCCCcc -5'
20432 3' -62 NC_004688.1 + 92952 0.67 0.547071
Target:  5'- gGCCGCgGcgauUCugCuUCGGAGUCGGGGGc -3'
miRNA:   3'- -CGGCGgU----AGugGcGGCCUUGGCCCCC- -5'
20432 3' -62 NC_004688.1 + 52570 0.67 0.547071
Target:  5'- cGCUGCUGaucugcUCGCUGCCGcuGAugcuGCCGaGGGGg -3'
miRNA:   3'- -CGGCGGU------AGUGGCGGC--CU----UGGC-CCCC- -5'
20432 3' -62 NC_004688.1 + 25519 0.67 0.537464
Target:  5'- aCCGCCGggugaccCACCGCCacccauuCCGGGGa -3'
miRNA:   3'- cGGCGGUa------GUGGCGGccuu---GGCCCCc -5'
20432 3' -62 NC_004688.1 + 60266 0.67 0.537464
Target:  5'- aGCCGCuCGUCACCcaGgUGGAACCcaaGGGu -3'
miRNA:   3'- -CGGCG-GUAGUGG--CgGCCUUGGc--CCCc -5'
20432 3' -62 NC_004688.1 + 74743 0.67 0.518433
Target:  5'- uCCGCCAggUgGCCGaCCGaGAACgUGGGGa -3'
miRNA:   3'- cGGCGGU--AgUGGC-GGC-CUUG-GCCCCc -5'
20432 3' -62 NC_004688.1 + 21390 0.67 0.518433
Target:  5'- gGUCGUCGUC-CaaaagGCCGGggUUGGGGa -3'
miRNA:   3'- -CGGCGGUAGuGg----CGGCCuuGGCCCCc -5'
20432 3' -62 NC_004688.1 + 35506 0.68 0.509017
Target:  5'- aCCGCCggCGCCGCCauauguGGCCGacGGGGc -3'
miRNA:   3'- cGGCGGuaGUGGCGGcc----UUGGC--CCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.