miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20433 5' -58.1 NC_004688.1 + 39662 0.66 0.810796
Target:  5'- gCCuuCGCCCCGCCGGgcgGuGUCUCaaguugaUGGGg -3'
miRNA:   3'- -GGc-GCGGGGCGGUCa--C-UAGAGc------AUCC- -5'
20433 5' -58.1 NC_004688.1 + 14041 0.67 0.740891
Target:  5'- -gGCGCCCCGCCgAGcaaGAcgaucggcacgcccuUCUCGUcGGc -3'
miRNA:   3'- ggCGCGGGGCGG-UCa--CU---------------AGAGCAuCC- -5'
20433 5' -58.1 NC_004688.1 + 54123 0.69 0.596823
Target:  5'- cCCGCGCCCCGaaGGcuucgCUCGUccGGGc -3'
miRNA:   3'- -GGCGCGGGGCggUCacua-GAGCA--UCC- -5'
20433 5' -58.1 NC_004688.1 + 63937 0.69 0.595815
Target:  5'- aUCGCGCCCCcacacugGCCGGgGAccgcCUCGgcGGg -3'
miRNA:   3'- -GGCGCGGGG-------CGGUCaCUa---GAGCauCC- -5'
20433 5' -58.1 NC_004688.1 + 6690 0.7 0.566709
Target:  5'- gCCGCGgCCCaCCAG-GAUCUCuucGGGg -3'
miRNA:   3'- -GGCGCgGGGcGGUCaCUAGAGca-UCC- -5'
20433 5' -58.1 NC_004688.1 + 2240 0.7 0.536999
Target:  5'- -gGCGCuCCCGCCGGaauAUCUCGccAGGa -3'
miRNA:   3'- ggCGCG-GGGCGGUCac-UAGAGCa-UCC- -5'
20433 5' -58.1 NC_004688.1 + 30379 0.71 0.517493
Target:  5'- -gGCGCCCgGgaaCAGgucgcggccGAUCUCGUAGGg -3'
miRNA:   3'- ggCGCGGGgCg--GUCa--------CUAGAGCAUCC- -5'
20433 5' -58.1 NC_004688.1 + 109579 0.72 0.451727
Target:  5'- gCCG-GCCCCGgC---GAUCUCGUGGGa -3'
miRNA:   3'- -GGCgCGGGGCgGucaCUAGAGCAUCC- -5'
20433 5' -58.1 NC_004688.1 + 97908 0.74 0.366381
Target:  5'- cCCGcCGCCCCGCgCGGgccUCUCGgcGGc -3'
miRNA:   3'- -GGC-GCGGGGCG-GUCacuAGAGCauCC- -5'
20433 5' -58.1 NC_004688.1 + 49140 0.74 0.350696
Target:  5'- gCCGCGCCgCgGCCGacGUGAUUUUGgcGGa -3'
miRNA:   3'- -GGCGCGG-GgCGGU--CACUAGAGCauCC- -5'
20433 5' -58.1 NC_004688.1 + 24187 0.74 0.343034
Target:  5'- cCCgGgGCCCCGCCcGUGGggaUCUCGggAGGa -3'
miRNA:   3'- -GG-CgCGGGGCGGuCACU---AGAGCa-UCC- -5'
20433 5' -58.1 NC_004688.1 + 18611 1.11 0.001158
Target:  5'- uCCGCGCCCCGCCAGUGAUCUCGUAGGu -3'
miRNA:   3'- -GGCGCGGGGCGGUCACUAGAGCAUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.