miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20434 3' -54.7 NC_004688.1 + 39911 0.65 0.910637
Target:  5'- uCACGGUGCcgucgggguuuuuGGCGUAGGUCCaguCGGCg- -3'
miRNA:   3'- cGUGCUACG-------------CUGCGUCUAGG---GCUGau -5'
20434 3' -54.7 NC_004688.1 + 62993 0.66 0.904964
Target:  5'- -gGCGAUGcCGAUGUGGAagUCCuCGGCg- -3'
miRNA:   3'- cgUGCUAC-GCUGCGUCU--AGG-GCUGau -5'
20434 3' -54.7 NC_004688.1 + 60883 0.66 0.897757
Target:  5'- -gGCGGUGCGguagucgaucgccACGCAGAUCCagcccuGCUGg -3'
miRNA:   3'- cgUGCUACGC-------------UGCGUCUAGGgc----UGAU- -5'
20434 3' -54.7 NC_004688.1 + 61974 0.67 0.869849
Target:  5'- cGCACGccGCcaauCGaAGAUCCCGACg- -3'
miRNA:   3'- -CGUGCuaCGcu--GCgUCUAGGGCUGau -5'
20434 3' -54.7 NC_004688.1 + 87903 0.67 0.854179
Target:  5'- -aGgGAUGCGACGCGGuUUUCGGCc- -3'
miRNA:   3'- cgUgCUACGCUGCGUCuAGGGCUGau -5'
20434 3' -54.7 NC_004688.1 + 51002 0.68 0.829091
Target:  5'- aCAUGA-GCGACGCAGA-CCUGcACg- -3'
miRNA:   3'- cGUGCUaCGCUGCGUCUaGGGC-UGau -5'
20434 3' -54.7 NC_004688.1 + 32581 0.68 0.79302
Target:  5'- uGCACGccGC--CGCGGAUCgCCGACa- -3'
miRNA:   3'- -CGUGCuaCGcuGCGUCUAG-GGCUGau -5'
20434 3' -54.7 NC_004688.1 + 52334 0.69 0.774021
Target:  5'- gGCGCGG-GCGGCGCAGAUUcaucggagcggUCGAUg- -3'
miRNA:   3'- -CGUGCUaCGCUGCGUCUAG-----------GGCUGau -5'
20434 3' -54.7 NC_004688.1 + 38855 0.69 0.744538
Target:  5'- -uGCGAUcaGCGACaCAGAUCCgGACa- -3'
miRNA:   3'- cgUGCUA--CGCUGcGUCUAGGgCUGau -5'
20434 3' -54.7 NC_004688.1 + 58658 0.69 0.734488
Target:  5'- uGCACGGacgGCGAUGgAGcAUCCCG-CUGu -3'
miRNA:   3'- -CGUGCUa--CGCUGCgUC-UAGGGCuGAU- -5'
20434 3' -54.7 NC_004688.1 + 4605 0.7 0.713087
Target:  5'- cGCACGcgGCGGC-CAGGUcaaucgcuuccugCCCGGCa- -3'
miRNA:   3'- -CGUGCuaCGCUGcGUCUA-------------GGGCUGau -5'
20434 3' -54.7 NC_004688.1 + 77202 0.71 0.662053
Target:  5'- cGgACGAUGgCGGCGCcgauGAUCaCCGACa- -3'
miRNA:   3'- -CgUGCUAC-GCUGCGu---CUAG-GGCUGau -5'
20434 3' -54.7 NC_004688.1 + 18768 1.08 0.002942
Target:  5'- uGCACGAUGCGACGCAGAUCCCGACUAc -3'
miRNA:   3'- -CGUGCUACGCUGCGUCUAGGGCUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.