miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20434 5' -60.5 NC_004688.1 + 49080 0.66 0.623115
Target:  5'- aGCCG-CCaaAGGAGGGCuCC-CGGugAg -3'
miRNA:   3'- -CGGUaGG--UCCUCCCGcGGuGCCugUa -5'
20434 5' -60.5 NC_004688.1 + 94616 0.66 0.599643
Target:  5'- aGCCAUCCcauuuuacaggGGGugacuGGGCGCCcauccaccagggcgAUGGAUAUc -3'
miRNA:   3'- -CGGUAGG-----------UCCu----CCCGCGG--------------UGCCUGUA- -5'
20434 5' -60.5 NC_004688.1 + 33923 0.66 0.582371
Target:  5'- cGCCA-CCAGGAGcGCcauuGCCGcCGGACu- -3'
miRNA:   3'- -CGGUaGGUCCUCcCG----CGGU-GCCUGua -5'
20434 5' -60.5 NC_004688.1 + 63355 0.66 0.582371
Target:  5'- cGCCAUCCcucgGGGAGguaGGUGuUUACGGGCGc -3'
miRNA:   3'- -CGGUAGG----UCCUC---CCGC-GGUGCCUGUa -5'
20434 5' -60.5 NC_004688.1 + 75551 0.67 0.572257
Target:  5'- aGCCAUCCAGGuacgccugaAGGGUcucGUCGaGGGCGa -3'
miRNA:   3'- -CGGUAGGUCC---------UCCCG---CGGUgCCUGUa -5'
20434 5' -60.5 NC_004688.1 + 55247 0.67 0.552162
Target:  5'- aCCGggCCAGGAGGGUcugcgcacCCGCGGcACGUg -3'
miRNA:   3'- cGGUa-GGUCCUCCCGc-------GGUGCC-UGUA- -5'
20434 5' -60.5 NC_004688.1 + 37477 0.67 0.53624
Target:  5'- cCUAUCCAGGauuucaggcgacuauGcgGGGCGUCACGGAgAUg -3'
miRNA:   3'- cGGUAGGUCC---------------U--CCCGCGGUGCCUgUA- -5'
20434 5' -60.5 NC_004688.1 + 84098 0.68 0.512671
Target:  5'- gGgCAU-CAGGAGGGCGUCgcuGCGGugGc -3'
miRNA:   3'- -CgGUAgGUCCUCCCGCGG---UGCCugUa -5'
20434 5' -60.5 NC_004688.1 + 90242 0.68 0.483831
Target:  5'- aCCAUCCAGuccuuuuuGA-GGCGCgGCGGGCGg -3'
miRNA:   3'- cGGUAGGUC--------CUcCCGCGgUGCCUGUa -5'
20434 5' -60.5 NC_004688.1 + 20272 0.68 0.465044
Target:  5'- uGCCAUCUAGGuugcGGuaGUCGCGGAUc- -3'
miRNA:   3'- -CGGUAGGUCCu---CCcgCGGUGCCUGua -5'
20434 5' -60.5 NC_004688.1 + 63714 0.69 0.455793
Target:  5'- gGCCuccgCCAGGuauucgAGGGCGUUGCGGAUc- -3'
miRNA:   3'- -CGGua--GGUCC------UCCCGCGGUGCCUGua -5'
20434 5' -60.5 NC_004688.1 + 42337 0.69 0.446643
Target:  5'- uGCCggCCAcGAGGGCGCgGuCGGugAa -3'
miRNA:   3'- -CGGuaGGUcCUCCCGCGgU-GCCugUa -5'
20434 5' -60.5 NC_004688.1 + 10688 0.69 0.428655
Target:  5'- aGCCGUCCgucAGGucgaccucauGGGCGCUggGGGCGg -3'
miRNA:   3'- -CGGUAGG---UCCu---------CCCGCGGugCCUGUa -5'
20434 5' -60.5 NC_004688.1 + 55825 0.7 0.394
Target:  5'- cGUgAUCgAGGuGGGCGCCGCGaccGGCGg -3'
miRNA:   3'- -CGgUAGgUCCuCCCGCGGUGC---CUGUa -5'
20434 5' -60.5 NC_004688.1 + 20419 0.71 0.337899
Target:  5'- uGCCGUCCucguGcAGGGCGCCGaGGugGUa -3'
miRNA:   3'- -CGGUAGGu---CcUCCCGCGGUgCCugUA- -5'
20434 5' -60.5 NC_004688.1 + 33999 0.71 0.315699
Target:  5'- aCCAaCguGGGGGGCGUCGgGGGCGUc -3'
miRNA:   3'- cGGUaGguCCUCCCGCGGUgCCUGUA- -5'
20434 5' -60.5 NC_004688.1 + 681 0.72 0.294617
Target:  5'- uGCCGUCCAcaugagccgcccGGAGGGCGCgCA-GGGCc- -3'
miRNA:   3'- -CGGUAGGU------------CCUCCCGCG-GUgCCUGua -5'
20434 5' -60.5 NC_004688.1 + 29805 0.72 0.287838
Target:  5'- uGCCGUCCAGGAaGGUGCCcguGGGCc- -3'
miRNA:   3'- -CGGUAGGUCCUcCCGCGGug-CCUGua -5'
20434 5' -60.5 NC_004688.1 + 91499 0.77 0.130212
Target:  5'- aGCCaAUCCgAGGcGGGUGCCGCGGAUGUc -3'
miRNA:   3'- -CGG-UAGG-UCCuCCCGCGGUGCCUGUA- -5'
20434 5' -60.5 NC_004688.1 + 18734 1.07 0.000991
Target:  5'- cGCCAUCCAGGAGGGCGCCACGGACAUc -3'
miRNA:   3'- -CGGUAGGUCCUCCCGCGGUGCCUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.