miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20435 5' -51.4 NC_004688.1 + 5554 0.66 0.968789
Target:  5'- --gACCU--GGCGCAuCAgcgCCUCGUUCu -3'
miRNA:   3'- cagUGGAcaUCGCGU-GUa--GGAGUAAG- -5'
20435 5' -51.4 NC_004688.1 + 79153 0.66 0.965453
Target:  5'- -gCGCCUGguuguagAGCGCGCcgaCCUCGUc- -3'
miRNA:   3'- caGUGGACa------UCGCGUGua-GGAGUAag -5'
20435 5' -51.4 NC_004688.1 + 37263 0.66 0.957649
Target:  5'- cGUCugCUcccGCGCAUAUCCaccacccguggcuUCAUUCg -3'
miRNA:   3'- -CAGugGAcauCGCGUGUAGG-------------AGUAAG- -5'
20435 5' -51.4 NC_004688.1 + 77675 0.69 0.8984
Target:  5'- -gCGCUUGUcgcagcGCGCGCAUCCaaaugUCAUUCc -3'
miRNA:   3'- caGUGGACAu-----CGCGUGUAGG-----AGUAAG- -5'
20435 5' -51.4 NC_004688.1 + 19127 1.11 0.003714
Target:  5'- gGUCACCUGUAGCGCACAUCCUCAUUCa -3'
miRNA:   3'- -CAGUGGACAUCGCGUGUAGGAGUAAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.