miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20436 5' -53.1 NC_004688.1 + 46485 0.66 0.941452
Target:  5'- -cGCg-GGCUCCCCggUGAccACCACUCc -3'
miRNA:   3'- gaCGagUUGAGGGGa-GCUu-UGGUGAG- -5'
20436 5' -53.1 NC_004688.1 + 77504 0.66 0.93648
Target:  5'- gUGCgauggCAucGCUUCCCUgCGAuAGCCACUg -3'
miRNA:   3'- gACGa----GU--UGAGGGGA-GCU-UUGGUGAg -5'
20436 5' -53.1 NC_004688.1 + 26235 0.68 0.880026
Target:  5'- -gGUUUGAC-CCgCCUCGAGGCCGC-Ca -3'
miRNA:   3'- gaCGAGUUGaGG-GGAGCUUUGGUGaG- -5'
20436 5' -53.1 NC_004688.1 + 103063 0.68 0.880026
Target:  5'- gUGCUCGACUaCCUCacCGGu-CCGCUCu -3'
miRNA:   3'- gACGAGUUGA-GGGGa-GCUuuGGUGAG- -5'
20436 5' -53.1 NC_004688.1 + 36045 0.68 0.872492
Target:  5'- -cGCcaAACUCCuCCUUGggGCCAC-Ca -3'
miRNA:   3'- gaCGagUUGAGG-GGAGCuuUGGUGaG- -5'
20436 5' -53.1 NC_004688.1 + 97362 0.68 0.872492
Target:  5'- -cGCcCGACUCCCC-CGccACCACg- -3'
miRNA:   3'- gaCGaGUUGAGGGGaGCuuUGGUGag -5'
20436 5' -53.1 NC_004688.1 + 86353 0.69 0.813536
Target:  5'- uCUGCUCGGCcaugCCCCgcagaaucCGGAAaCACUCg -3'
miRNA:   3'- -GACGAGUUGa---GGGGa-------GCUUUgGUGAG- -5'
20436 5' -53.1 NC_004688.1 + 76103 0.7 0.77471
Target:  5'- -aGCUCGGCuagggauuucaUCCCCUCGGGcccgucgauaucuACCACgUCg -3'
miRNA:   3'- gaCGAGUUG-----------AGGGGAGCUU-------------UGGUG-AG- -5'
20436 5' -53.1 NC_004688.1 + 88082 0.72 0.672692
Target:  5'- -cGCccCGAC-CCCCUUGGcgAGCCACUCg -3'
miRNA:   3'- gaCGa-GUUGaGGGGAGCU--UUGGUGAG- -5'
20436 5' -53.1 NC_004688.1 + 21297 0.72 0.672692
Target:  5'- cCUGCUCcuuGGCUUCCCgaacCGAAACCgGCUUa -3'
miRNA:   3'- -GACGAG---UUGAGGGGa---GCUUUGG-UGAG- -5'
20436 5' -53.1 NC_004688.1 + 62743 0.73 0.608468
Target:  5'- -gGCUCGACUCCCCgCGAcugGugCGCa- -3'
miRNA:   3'- gaCGAGUUGAGGGGaGCU---UugGUGag -5'
20436 5' -53.1 NC_004688.1 + 21816 1.09 0.00358
Target:  5'- gCUGCUCAACUCCCCUCGAAACCACUCc -3'
miRNA:   3'- -GACGAGUUGAGGGGAGCUUUGGUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.