miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20437 3' -55.3 NC_004688.1 + 49401 0.66 0.860777
Target:  5'- cGCGGCccacgagaauggGGCgUUCCAugUCGCCGuugGCCAUu -3'
miRNA:   3'- -UGUUG------------CCG-AAGGU--AGCGGCua-CGGUA- -5'
20437 3' -55.3 NC_004688.1 + 93512 0.66 0.852719
Target:  5'- cCAAUGGCaguugUCCGUaucgcauguccCGCCGcgGCCGg -3'
miRNA:   3'- uGUUGCCGa----AGGUA-----------GCGGCuaCGGUa -5'
20437 3' -55.3 NC_004688.1 + 110122 0.66 0.844444
Target:  5'- cACGGCGGUacgacgUUAUCGCUGAagaUGCCAg -3'
miRNA:   3'- -UGUUGCCGaa----GGUAGCGGCU---ACGGUa -5'
20437 3' -55.3 NC_004688.1 + 15213 0.66 0.835961
Target:  5'- uCAACGGCg-CCG-CGCCGcgGCaCAUg -3'
miRNA:   3'- uGUUGCCGaaGGUaGCGGCuaCG-GUA- -5'
20437 3' -55.3 NC_004688.1 + 58535 0.67 0.8184
Target:  5'- gGCAGCGGCgcauggCCAUCcuguucCUGGUGCCc- -3'
miRNA:   3'- -UGUUGCCGaa----GGUAGc-----GGCUACGGua -5'
20437 3' -55.3 NC_004688.1 + 20545 0.67 0.800107
Target:  5'- cCAGCGGCgugcccUCCAggGCCuugaugguGAUGCCAUc -3'
miRNA:   3'- uGUUGCCGa-----AGGUagCGG--------CUACGGUA- -5'
20437 3' -55.3 NC_004688.1 + 100872 0.68 0.731423
Target:  5'- aACGACGGCUggaUCUAaaGgCGGUGCCGc -3'
miRNA:   3'- -UGUUGCCGA---AGGUagCgGCUACGGUa -5'
20437 3' -55.3 NC_004688.1 + 14002 0.68 0.721156
Target:  5'- uCGGCGGUUUCCAUCGCCaccucgacGAUuGCUu- -3'
miRNA:   3'- uGUUGCCGAAGGUAGCGG--------CUA-CGGua -5'
20437 3' -55.3 NC_004688.1 + 86834 0.68 0.721156
Target:  5'- -uGACGGCacggCCAUCGCUGGaaGCCGUc -3'
miRNA:   3'- ugUUGCCGaa--GGUAGCGGCUa-CGGUA- -5'
20437 3' -55.3 NC_004688.1 + 74695 0.7 0.647539
Target:  5'- -aGGCGGgUgCCGUcggCGCCGAUGCCGa -3'
miRNA:   3'- ugUUGCCgAaGGUA---GCGGCUACGGUa -5'
20437 3' -55.3 NC_004688.1 + 80523 0.7 0.615596
Target:  5'- uCGAUGGCcaCgGUCaGCCGGUGCCAg -3'
miRNA:   3'- uGUUGCCGaaGgUAG-CGGCUACGGUa -5'
20437 3' -55.3 NC_004688.1 + 24228 0.72 0.498066
Target:  5'- aGCGACGGCguccgUcgcgcccguggggaCCGUUGCCGGUGCCc- -3'
miRNA:   3'- -UGUUGCCGa----A--------------GGUAGCGGCUACGGua -5'
20437 3' -55.3 NC_004688.1 + 97569 0.74 0.42394
Target:  5'- -aAGCgGGCUUCC-UCgGCCGAUGCCGc -3'
miRNA:   3'- ugUUG-CCGAAGGuAG-CGGCUACGGUa -5'
20437 3' -55.3 NC_004688.1 + 22999 1.05 0.003677
Target:  5'- gACAACGGCUUCCAUCGCCGAUGCCAUc -3'
miRNA:   3'- -UGUUGCCGAAGGUAGCGGCUACGGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.