miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20437 5' -58.2 NC_004688.1 + 24067 0.66 0.759221
Target:  5'- gGCAucuUGACGUCGgauuggccaccgauCCGAUGGCUcCGCCc -3'
miRNA:   3'- -CGU---ACUGCGGU--------------GGCUACCGGcGUGGu -5'
20437 5' -58.2 NC_004688.1 + 44784 0.66 0.752469
Target:  5'- aCGUGAggaaggugccCGCCGCggUGGUGGCCGCGaacaguauCCAg -3'
miRNA:   3'- cGUACU----------GCGGUG--GCUACCGGCGU--------GGU- -5'
20437 5' -58.2 NC_004688.1 + 41619 0.66 0.752469
Target:  5'- --uUGGCGCCGCCGcccGGaCCGUgguggaacGCCAg -3'
miRNA:   3'- cguACUGCGGUGGCua-CC-GGCG--------UGGU- -5'
20437 5' -58.2 NC_004688.1 + 77220 0.66 0.752469
Target:  5'- aGCucgugGGCGCgGuaucggaCGAUGGCgGCGCCGa -3'
miRNA:   3'- -CGua---CUGCGgUg------GCUACCGgCGUGGU- -5'
20437 5' -58.2 NC_004688.1 + 92049 0.66 0.752469
Target:  5'- gGCgAUGAgaucCG-CGCCGggGGCCGCcCCAu -3'
miRNA:   3'- -CG-UACU----GCgGUGGCuaCCGGCGuGGU- -5'
20437 5' -58.2 NC_004688.1 + 15279 0.66 0.742732
Target:  5'- uCAUGGUGCCguaCGAUcGGCCGCGCa- -3'
miRNA:   3'- cGUACUGCGGug-GCUA-CCGGCGUGgu -5'
20437 5' -58.2 NC_004688.1 + 26322 0.66 0.742732
Target:  5'- cGCA--AgGCCACCGAcgccgaGGCCGcCGCCc -3'
miRNA:   3'- -CGUacUgCGGUGGCUa-----CCGGC-GUGGu -5'
20437 5' -58.2 NC_004688.1 + 102380 0.66 0.742732
Target:  5'- aGCAggUGugGCCGgCGGagcaggugUGGCCGguCUAc -3'
miRNA:   3'- -CGU--ACugCGGUgGCU--------ACCGGCguGGU- -5'
20437 5' -58.2 NC_004688.1 + 2540 0.66 0.732898
Target:  5'- cCGUGACGgUGgCGGUGGCCaucugggcGCGCCu -3'
miRNA:   3'- cGUACUGCgGUgGCUACCGG--------CGUGGu -5'
20437 5' -58.2 NC_004688.1 + 102454 0.66 0.722975
Target:  5'- cGCAUGG-GCCGCgaaCGAUgaGGCCGaCGCUAu -3'
miRNA:   3'- -CGUACUgCGGUG---GCUA--CCGGC-GUGGU- -5'
20437 5' -58.2 NC_004688.1 + 20869 0.67 0.7029
Target:  5'- cCGUGGCGaacaGCgGGUaacccugcaGGCCGCGCCAg -3'
miRNA:   3'- cGUACUGCgg--UGgCUA---------CCGGCGUGGU- -5'
20437 5' -58.2 NC_004688.1 + 26468 0.67 0.692767
Target:  5'- -----uCGaCGCCGAUGGCCGCaACCu -3'
miRNA:   3'- cguacuGCgGUGGCUACCGGCG-UGGu -5'
20437 5' -58.2 NC_004688.1 + 105929 0.67 0.692767
Target:  5'- ---gGACGCaCGCgaGAUGGCCGCAg-- -3'
miRNA:   3'- cguaCUGCG-GUGg-CUACCGGCGUggu -5'
20437 5' -58.2 NC_004688.1 + 84097 0.67 0.682583
Target:  5'- gGCAUcaggagGGCGUCGCugCGGUGGCCGCGg-- -3'
miRNA:   3'- -CGUA------CUGCGGUG--GCUACCGGCGUggu -5'
20437 5' -58.2 NC_004688.1 + 6699 0.67 0.682583
Target:  5'- aGCc--GCGCCGCCGc-GGCC-CACCAg -3'
miRNA:   3'- -CGuacUGCGGUGGCuaCCGGcGUGGU- -5'
20437 5' -58.2 NC_004688.1 + 59325 0.67 0.662097
Target:  5'- gGCGagGGCuCCACCcugcccgacgcGAUGGCCGcCGCCGg -3'
miRNA:   3'- -CGUa-CUGcGGUGG-----------CUACCGGC-GUGGU- -5'
20437 5' -58.2 NC_004688.1 + 16341 0.67 0.66107
Target:  5'- ---cGACGUCACCGAcgucugggaauUGGCCGagaagguggccgaCGCCAc -3'
miRNA:   3'- cguaCUGCGGUGGCU-----------ACCGGC-------------GUGGU- -5'
20437 5' -58.2 NC_004688.1 + 102676 0.68 0.651813
Target:  5'- cGCGggcGACuCCAUCGAacUGGUCGaCACCAg -3'
miRNA:   3'- -CGUa--CUGcGGUGGCU--ACCGGC-GUGGU- -5'
20437 5' -58.2 NC_004688.1 + 7852 0.68 0.651813
Target:  5'- aGCGUucGGcCGCCagccccagGCCGAUGGCCGaaGCCGc -3'
miRNA:   3'- -CGUA--CU-GCGG--------UGGCUACCGGCg-UGGU- -5'
20437 5' -58.2 NC_004688.1 + 8525 0.68 0.641513
Target:  5'- cCGUGACGUCaACC---GGCCGCACUc -3'
miRNA:   3'- cGUACUGCGG-UGGcuaCCGGCGUGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.