miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20438 3' -54.3 NC_004688.1 + 12365 0.66 0.932602
Target:  5'- uUGuUGGCGaucgccacccacUCUGcGGAGCCCGuGGCGa -3'
miRNA:   3'- -ACuACCGC------------AGGCuCUUUGGGCuCUGC- -5'
20438 3' -54.3 NC_004688.1 + 37020 0.66 0.909909
Target:  5'- cUGAUGGCaggaUCGGGAAcaggcccgaACCCGAGAa- -3'
miRNA:   3'- -ACUACCGca--GGCUCUU---------UGGGCUCUgc -5'
20438 3' -54.3 NC_004688.1 + 5753 0.67 0.903614
Target:  5'- cGAUGGCGUuguacugggcCCGGGugacgcGGCCgaGGGGCGg -3'
miRNA:   3'- aCUACCGCA----------GGCUCu-----UUGGg-CUCUGC- -5'
20438 3' -54.3 NC_004688.1 + 8541 0.67 0.890295
Target:  5'- ---cGGUGUUCGGGGuGAUCCGuGACGu -3'
miRNA:   3'- acuaCCGCAGGCUCU-UUGGGCuCUGC- -5'
20438 3' -54.3 NC_004688.1 + 54289 0.67 0.883278
Target:  5'- ---cGGCGgCCGGGGAACaCCaGGGCGu -3'
miRNA:   3'- acuaCCGCaGGCUCUUUG-GGcUCUGC- -5'
20438 3' -54.3 NC_004688.1 + 28545 0.67 0.876027
Target:  5'- cGGUGGUGaugUCGuAGAcagcccucuGACCCGGGugGg -3'
miRNA:   3'- aCUACCGCa--GGC-UCU---------UUGGGCUCugC- -5'
20438 3' -54.3 NC_004688.1 + 62882 0.67 0.876027
Target:  5'- gGGUgGGCGUCgGAGAGcGCCCaguagcAGGCGa -3'
miRNA:   3'- aCUA-CCGCAGgCUCUU-UGGGc-----UCUGC- -5'
20438 3' -54.3 NC_004688.1 + 41134 0.67 0.868548
Target:  5'- aUGAUGGCG-CCGccGAAugUCGGGAa- -3'
miRNA:   3'- -ACUACCGCaGGCu-CUUugGGCUCUgc -5'
20438 3' -54.3 NC_004688.1 + 13056 0.68 0.860847
Target:  5'- cGGUGGCGucUCCGuGGAcaaCgGAGACGu -3'
miRNA:   3'- aCUACCGC--AGGCuCUUug-GgCUCUGC- -5'
20438 3' -54.3 NC_004688.1 + 90818 0.68 0.860847
Target:  5'- uUGcgGGCGcgcugcugccaCCGGGAGACCCGcGGAUa -3'
miRNA:   3'- -ACuaCCGCa----------GGCUCUUUGGGC-UCUGc -5'
20438 3' -54.3 NC_004688.1 + 37295 0.69 0.809457
Target:  5'- gUGuUGGUGcCCGuGGAGCCCGAcguccacGACGu -3'
miRNA:   3'- -ACuACCGCaGGCuCUUUGGGCU-------CUGC- -5'
20438 3' -54.3 NC_004688.1 + 24226 0.69 0.792082
Target:  5'- cGAcGGCGUCCGucgcgcccgugGGGAccguugccgguGCCCGGGGCc -3'
miRNA:   3'- aCUaCCGCAGGC-----------UCUU-----------UGGGCUCUGc -5'
20438 3' -54.3 NC_004688.1 + 99609 0.69 0.782715
Target:  5'- aGGcUGGCGUgcgccacgCCGAGAAACUCG-GACu -3'
miRNA:   3'- aCU-ACCGCA--------GGCUCUUUGGGCuCUGc -5'
20438 3' -54.3 NC_004688.1 + 10859 0.7 0.753802
Target:  5'- cGAccUGGuUGUUCGAGccgguGCCCGAGAUGa -3'
miRNA:   3'- aCU--ACC-GCAGGCUCuu---UGGGCUCUGC- -5'
20438 3' -54.3 NC_004688.1 + 23102 1.08 0.003653
Target:  5'- uUGAUGGCGUCCGAGAAACCCGAGACGc -3'
miRNA:   3'- -ACUACCGCAGGCUCUUUGGGCUCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.